FC918213

Overview
NameFC918213
Unique NameFC918213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC918213 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 67/254 (26.38%), Postives = 104/254 (40.94%), Query Frame = 1 
Query:  127 ISLGSTLFASNYLNQSWPSPNSTFSLTFVQKTPTSYIPAITYSGGVPVWTAGKTAVDSSG----------SFQLHPSGTLRLVNGTGAIIWDSSTGSLN-VSSACLDDSGNFKLLKNDSVSAWSSFDNPTDAILPSQNFTYGKILRSGYYSFTLLRPGNLTLRWND----SVVY-----------------YNEGFKSNLTSPILSLQPNGILSIFDETLXXXXXXXXXXXXXEGSDVLRFLRLDSDGNLRIYS 792
            + LGS+L   +Y + +  S + TFS  F +    ++  ++ YS         KT V S+           +  L   G + L +  GA +W +   +   V  A L D+GN  +  +   + W SFD+PTD  LP+Q  T    L     S +   PGN   R++D    S++Y                 Y +G     ++ +  L  +G+L+  D                 G  V R L LD DGNLR+YS
Sbjct:   32 LPLGSSLVVESYESSTLQSSDGTFSSGFYEVYTHAFTFSVWYSKTEAAAANNKTIVWSANPDRPVHARRSALTLQKDGNMVLTDYDGAAVWRADGNNFTGVQRARLLDTGNLVIEDSGGNTVWQSFDSPTDTFLPTQLITAATRLVPTTQSRS---PGNYIFRFSDLSVLSLIYHVPQVSDIYWPDPDQNLYQDGRNQYNSTRLGMLTDSGVLASSD-----FADGQALVASDVGPGVKRRLTLDPDGNLRLYS 277
The following BLAST results are available for this feature:
BLAST of FC918213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KPRO_MAIZE8.284e-1126.38Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA29CD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918213 ID=FC918213; Name=FC918213; organism=Citrus clementina; type=EST; length=812bp
TGATTAAATGTCCCAGACATTAAACCATAAACACTACACAGACCAAAAAT
GACACTCACATTTTCAGCTTTAGCTATAACACTACTATTCTCACTAAGCT
TTCATTTTAGCTTTTCATTTGCAAACATAAGCTTAGGCTCCACTCTTTTC
GCTTCAAATTACTTGAACCAATCTTGGCCTTCACCAAACAGCACATTTTC
TCTCACATTCGTTCAAAAAACACCAACTTCTTACATTCCCGCTATCACTT
ATTCCGGCGGAGTTCCCGTCTGGACCGCCGGAAAAACCGCCGTTGACTCA
TCTGGGTCCTTTCAGCTTCACCCCTCCGGCACTCTCCGCCTCGTCAATGG
CACCGGTGCCATCATCTGGGACTCTTCAACCGGAAGTCTTAATGTCTCCT
CTGCTTGTCTTGATGACTCTGGCAACTTCAAACTCCTCAAAAACGATAGC
GTTTCCGCTTGGTCCTCGTTTGATAATCCCACCGATGCCATCCTTCCTTC
ACAGAATTTCACTTATGGAAAGATTTTGCGATCTGGGTATTATTCATTTA
CTCTCCTTAGACCAGGGAATTTAACTTTGAGGTGGAATGATAGCGTTGTT
TATTATAATGAAGGCTTCAAATCAAATTTGACTTCACCGATTTTAAGTTT
GCAGCCAAATGGAATTTTGTCAATATTTGATGAGACATTATCTAGTGCTG
CTATTATTGCTTATAGTAGTGATTATGCTGAGGGTAGTGATGTATTGAGG
TTCTTGAGATTAGATAGTGATGGTAATTTGAGGATCTATAGTTCTGCTAG
AGGTACTGGGAC
back to top