FC918220

Overview
NameFC918220
Unique NameFC918220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918220 vs. ExPASy Swiss-Prot
Match: TFDP1_HUMAN (Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.202e-43
Identity = 96/187 (51.34%), Postives = 129/187 (68.98%), Query Frame = 1
Query:  268 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLH 819
            +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  Q +  +NL+QRN   E+  S    P+  + LPFI+V T     ++  IS D     F+F++T F++H
Sbjct:  110 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNT-FEIH 294          
BLAST of FC918220 vs. ExPASy Swiss-Prot
Match: TFDP1_MOUSE (Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.406e-43
Identity = 94/187 (50.27%), Postives = 127/187 (67.91%), Query Frame = 1
Query:  268 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGN---APSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLH 819
            +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  Q +  +NL+QRN +          P+  + LPFI+V T     ++  IS D     F+F++T F++H
Sbjct:  110 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQAEQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDKFEYLFNFDNT-FEIH 294          
BLAST of FC918220 vs. ExPASy Swiss-Prot
Match: TFDP1_BOVIN (Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.406e-43
Identity = 96/187 (51.34%), Postives = 129/187 (68.98%), Query Frame = 1
Query:  268 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLH 819
            +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+  ++S   P +  YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  Q +  +NL+QRN   E+  S    P+  + LPFI+V T     ++  IS D     F+F++T F++H
Sbjct:  110 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFS-AADSHILPSESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQSLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQVEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNT-FEIH 294          
BLAST of FC918220 vs. ExPASy Swiss-Prot
Match: TFDP2_HUMAN (Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.093e-42
Identity = 94/187 (50.27%), Postives = 126/187 (67.38%), Query Frame = 1
Query:  268 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLH 819
            DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA      YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K A LQEL  Q +  +NL+QRN +       P   +  + LPFI++ T     ++  IS D     F+F++T F++H
Sbjct:  126 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNT-FEIH 309          
BLAST of FC918220 vs. ExPASy Swiss-Prot
Match: TFDP_DROME (Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.329e-39
Identity = 90/186 (48.39%), Postives = 119/186 (63.98%), Query Frame = 1
Query:  268 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPS--GGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLH 819
            DK+G+GLR FSMKVCEKVE KG+TTYNEVAD+LV+E  +  N+         D+KNIRRRVYDALNVLMA+++ISKDKKEI+W GLP  S      L+ E    R RI++K   L+E+  Q V  + L++RN+R  S G  PS    + LPFI+V T     +   ++ D     F F+ T F++H
Sbjct:  164 DKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSE--EMKNNAY---DNNCDQKNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTETFLALEEENCQRRERIKQKNEMLREMIMQHVAFKGLVERNKRNESQGVVPSPNASIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKT-FEMH 343          
BLAST of FC918220 vs. ExPASy Swiss-Prot
Match: TFDP2_MOUSE (Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.186e-34
Identity = 84/187 (44.92%), Postives = 117/187 (62.57%), Query Frame = 1
Query:  268 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLH 819
            DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA      YD++NIRRRVYDALNVLMAM+IIS      +   +   S  + + L+ E+     RI++K A LQEL  Q +  +NL+QRN +       P   +  + LPFI++ T     ++  IS D     F+F++T F++H
Sbjct:  126 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DSAYDQENIRRRVYDALNVLMAMNIISSLPTGKKRNQVDCNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPAVNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNT-FEIH 309          
BLAST of FC918220 vs. ExPASy Swiss-Prot
Match: TFDP1_CAEEL (Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.435e-34
Identity = 82/183 (44.81%), Postives = 112/183 (61.20%), Query Frame = 1
Query:  283 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPD--QQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVA--LPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLH 819
            GLR FS KVCEKV+ KG T YNEVADELVA++   +N +   D  +Q+YD KNIRRRVYDALNVL+AM+II+K KK+I+W GLP ++  +I  L+ E+      I  K   L+E+  Q V  +NL++RN +       P       LPF+++ T   A VE  +S D     F F+   F++H
Sbjct:   72 GLRHFSTKVCEKVKEKGLTNYNEVADELVADYFQ-NNLIKQIDVVKQEYDMKNIRRRVYDALNVLLAMNIITKSKKDIRWIGLPASASQEISRLEEEKSRREASISSKKQALEEMVLQIVSYKNLVERNRKNEHKNGRPENDTVLHLPFLIINTDKEANVECSVSSDKSEFLFSFDK-KFEIH 252          
BLAST of FC918220 vs. ExPASy Swiss-Prot
Match: TFDP3_HUMAN (Transcription factor Dp family member 3 OS=Homo sapiens GN=TFDP3 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.982e-32
Identity = 80/187 (42.78%), Postives = 116/187 (62.03%), Query Frame = 1
Query:  268 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLH 819
            +K+G GL + SMKV E V+ KG T+  EV  ELVA+F   SN  A+P++  YD KNI+RR YDALNVLMAM+IIS++KK+I+W GL   S  + + L+ ER     RI++K + LQ+L  Q +  +NL+ RN   E   S    P+  + +PFI++ +     +   IS+D     F FNS+ F++H
Sbjct:  105 EKNGMGLCRLSMKVWETVQRKGTTSCQEVVGELVAKFRAASNH-ASPNESAYDVKNIKRRTYDALNVLMAMNIISREKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFKNLVLRNQYVEEQVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKSEYLFKFNSS-FEIH 289          
The following BLAST results are available for this feature:
BLAST of FC918220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TFDP1_HUMAN2.202e-4351.34Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1... [more]
TFDP1_MOUSE6.406e-4350.27Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1... [more]
TFDP1_BOVIN6.406e-4351.34Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 P... [more]
TFDP2_HUMAN1.093e-4250.27Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2... [more]
TFDP_DROME7.329e-3948.39Transcription factor Dp OS=Drosophila melanogaster... [more]
TFDP2_MOUSE3.186e-3444.92Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2... [more]
TFDP1_CAEEL5.435e-3444.81Transcription factor dpl-1 OS=Caenorhabditis elega... [more]
TFDP3_HUMAN2.982e-3242.78Transcription factor Dp family member 3 OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA96BA02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918220 ID=FC918220; Name=FC918220; organism=Citrus clementina; type=EST; length=821bp
AATAACAGCCACCAGGAGGATGGTGACCGCCAACAACCGGCAGCCAAAGG
GGGAGGGGCTACGCGGTCGTGGGGCACCACCGTTTCCGGCCAATCAGTCT
CTACAAGCGGCAGCGTGGGGTCGCCGTCGCAAAGCATGGCTACGCCAGCA
AGTGATAGCACCTTTCTCCGGCTAAACCACCTTGACATTCACGGTGATGA
TGCCGGCTCCCAAGGCGCTGTTGTCGGTGGCAAGAAGAAAAAGAGAGGTC
AAAGGGCGGGCGGAGGAGATAAAAGTGGCCGAGGACTTCGCCAATTTAGC
ATGAAAGTGTGTGAGAAAGTGGAAAGCAAGGGAAGAACTACATACAATGA
GGTTGCAGATGAGCTTGTGGCTGAATTTGCTGATCCTAGCAATAGTTTAG
CAACCCCAGATCAGCAACAATATGATGAGAAAAACATAAGACGAAGGGTA
TATGATGCCCTAAATGTACTGATGGCGATGGATATTATATCAAAGGATAA
AAAGGAAATACAGTGGAAGGGTCTTCCTCGCACTAGCCTGAATGACATTG
AAGAATTAAAGGCTGAGCGTCTTGGACTGAGAAATAGAATTGAAAAGAAA
ACTGCCTATCTGCAGGAACTGGAGGATCAATTTGTAGGACTTCAAAACCT
TATACAACGAAATGAGCGATTATACAGTTCAGGAAATGCTCCCAGTGGGG
GTGTGGCTTTACCTTTTATTCTGGTGCAGACACGACCTCATGCAACCGTT
GAAGTGGAAATATCAGAAGATATGCAGCTGGTGCATTTTGACTTTAATAG
CACCCCTTTTAAGCTCCATGA
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