FC918234

Overview
NameFC918234
Unique NameFC918234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918234 vs. ExPASy Swiss-Prot
Match: OPDA_HAEIN (Oligopeptidase A OS=Haemophilus influenzae GN=prlC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.646e-30
Identity = 63/187 (33.69%), Postives = 114/187 (60.96%), Query Frame = 1
Query:  259 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEPSWPKLVEPLEKIVDQLTVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSHARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEXL 819
            NPLL     PPF  +K EH+RP +  L++   + ++++ +    +W   + PL +  D+L   W  ++HL SVK++ ELR A +   P   ++   +GQ K +YNA+ A++ S E+   S A+K+ +E+ +++  L+G+ L ++K++++ +I   L +L+ +FS NVLDAT  +EKLI ++ E+  L
Sbjct:    5 NPLLNIQGLPPFSQIKPEHIRPAVEKLIQDCRNTIEQVLKQPHFTWENFILPLTETNDRLNRAWSPVSHLNSVKNSTELREAYQTCLPLLSEYSTWVGQHKGLYNAYLALKNSAEFADYSIAQKKAIENSLRDFELSGIGLSEEKQQRYGEIVARLSELNSQFSNNVLDATMGWEKLIENEAELAGL 191          
BLAST of FC918234 vs. ExPASy Swiss-Prot
Match: OPDA_SALTY (Oligopeptidase A OS=Salmonella typhimurium GN=prlC PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 64/185 (34.59%), Postives = 112/185 (60.54%), Query Frame = 1
Query:  259 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEP-SWPKLVEPLEKIVDQLTVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSHARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEI 810
            NPLL  F  PPF  +K EHV P +   L    + ++ +     P SW  L +PL +  D L  ++  I+HL SVK++PELR A E+  P   ++   +GQ + +YNA++ +++   +  L+ A+K+ V++ +++  L+G+ L  +K++++ +I   L +L +++S NVLDAT  + KLITD+ E+
Sbjct:    3 NPLLTSFSLPPFSAIKPEHVVPAVTKALADCRAAVEGVVAHGAPYSWENLCQPLAEADDVLGRIFSPISHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYNAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNQYSNNVLDATMGWTKLITDEAEL 187          
BLAST of FC918234 vs. ExPASy Swiss-Prot
Match: OPDA_ECOLI (Oligopeptidase A OS=Escherichia coli (strain K12) GN=prlC PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.613e-28
Identity = 60/185 (32.43%), Postives = 112/185 (60.54%), Query Frame = 1
Query:  259 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEP-SWPKLVEPLEKIVDQLTVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSHARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEI 810
            NPLL  FE PPF  +  EHV P +   L     +++ +     P +W  L +PL ++ D L  ++  ++HL SVK++PELR A E+  P   ++   +GQ + +Y A++ +++   +  L+ A+K+ V++ +++  L+G+ L  +K++++ +I   L +L +++S NVLDAT  + KL+TD+ E+
Sbjct:    3 NPLLTPFELPPFSKILPEHVVPAVTKALNDCRENVERVVAQGAPYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSELGNQYSNNVLDATMGWTKLVTDEAEL 187          
The following BLAST results are available for this feature:
BLAST of FC918234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OPDA_HAEIN3.646e-3033.69Oligopeptidase A OS=Haemophilus influenzae GN=prlC... [more]
OPDA_SALTY5.264e-2934.59Oligopeptidase A OS=Salmonella typhimurium GN=prlC... [more]
OPDA_ECOLI2.613e-2832.43Oligopeptidase A OS=Escherichia coli (strain K12) ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA74DD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918234 ID=FC918234; Name=FC918234; organism=Citrus clementina; type=EST; length=819bp
CGTTTCTCGGTGTCGCGCTCAGTTCACCCAATATTAAGAAAGTCACCAAA
ACGCATATCCCAATTGACCTCAAAATATTTACACAAATCCCAATCCTGTC
CTCTCTGGTCTTCTTCTTTCTCCTTTTGTCTCCAATCTCTTCACAAATCC
AAAACGACCTCACTCTCTTTCTCTACTAGTTCTACTTGCCCCCCTTCTTC
ACTCTCTATGGCCGCCTCCGCGACTGCTTCTGCTGTTGATGACTTATCTC
TCAAAGACAATCCGTTGTTGCAGGACTTTGAGTTTCCTCCTTTTGATGTC
GTTAAGGCCGAGCATGTCCGGCCTGGGATTCGTGCTCTTTTGAAACAACT
GGAAAGTGATTTGGATGAACTGGAGAGAACAGTGGAGCCGTCATGGCCAA
AGTTGGTGGAGCCACTGGAGAAGATTGTAGATCAACTGACTGTTGTTTGG
GGGATGATCAATCATCTGAAGTCTGTTAAGGACACTCCTGAGCTCCGTTC
TGCCATTGAAGAAGTCCAGCCAGAGAAAGTGAAGTTTCAGCTTCGTTTGG
GTCAAAGCAAACCCATCTACAATGCATTCAAAGCTATTCAAGAATCTCCT
GAATGGAATGCTTTGAGTCATGCTCGCAAACGTATAGTCGAATCACAAAT
AAAGGAAGCGGTTCTCAATGGTGTCTCACTGGAAGATGATAAACGAGAAC
AATTTAACAAGATTGAGCAGGAACTGGAAAAACTCTCTCATAAATTTTCG
GAGAATGTTTTGGACGCCACAAAGAAATTTGAAAAGTTAATAACCGATAA
GAAAGAAATTGAANGATTA
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