FC918235

Overview
NameFC918235
Unique NameFC918235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC918235 vs. ExPASy Swiss-Prot
Match: EBM_LILLO (Mannosylglycoprotein endo-beta-mannosidase OS=Lilium longiflorum GN=EBM PE=1 SV=4)

HSP 1 Score: 469.544 bits (1207), Expect = 1.161e-131
Identity = 218/290 (75.17%), Postives = 249/290 (85.86%), Query Frame = 1
Query:   37 IGKTKLDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYTFWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFSQLFFYKPILW 906
            +GK  LDSGWLAARSTE+ L+G QLTT+ PP+G + PW+EAVVPGTVL TL+KNK VPDPFYGL NE ILDI DSGREYYTFWFF +F+CKLSENQH+ LNFRAINYSAEVYLNG K +L KGMFRRHS+D+TDILHPDG+N+LAVLVHPPDHPG IPPEGGQGGDHEIGKDVATQYVEGWDW+APIRDRNTGIWDEVS+  +GPVKI D HLVSSFFD + R YLH++ ELEN+S+W AECSL+I VTT+L+G   L+E+ QT  LSI P + +QYT   LFFYKP LW
Sbjct:    1 MGKQVLDSGWLAARSTELELTGVQLTTTRPPSGTSAPWIEAVVPGTVLGTLLKNKLVPDPFYGLNNEGILDIYDSGREYYTFWFFKSFECKLSENQHVSLNFRAINYSAEVYLNGHKEILPKGMFRRHSIDITDILHPDGKNMLAVLVHPPDHPGQIPPEGGQGGDHEIGKDVATQYVEGWDWMAPIRDRNTGIWDEVSLYTSGPVKIADVHLVSSFFDMFRRAYLHSTVELENKSSWRAECSLTILVTTELDGDFNLIEYHQTHELSIPPESVIQYTLPPLFFYKPNLW 290          
BLAST of FC918235 vs. ExPASy Swiss-Prot
Match: EBM_ARATH (Mannosylglycoprotein endo-beta-mannosidase OS=Arabidopsis thaliana GN=EBM PE=1 SV=3)

HSP 1 Score: 458.373 bits (1178), Expect = 2.676e-128
Identity = 214/293 (73.04%), Postives = 249/293 (84.98%), Query Frame = 1
Query:   31 ASIGKTKLDSGWLAARSTEVGLSGTQLTTSHPPTGPAKP-WMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYTFWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFSQLFFYKPILW 906
            A IGKT LD GW+AARSTEV ++G QLTT++PP   ++  WMEA VPGTVL TLVKNKA+PDPFYGLENE I DIADSGR+YYTFWFFT FQC+   NQ++ LNFRAINYSA+V++NG K  L KGMFRRH+LDVTDILHP+  NLLA++VHPPDHPGTIPPEGGQGGDHEIGKDVA QYV+GWDWI PIRDRNTGIWDEVSISVTGPV+IIDPHLVS+FFD+Y R YLH + ELEN+STW  ECS++IQ+T +LE GVCLVEHLQT+++ I     +Q+TF  L+FYKP LW
Sbjct:    2 AEIGKTVLDFGWIAARSTEVDVNGVQLTTTNPPAISSESRWMEAAVPGTVLGTLVKNKAIPDPFYGLENEAITDIADSGRDYYTFWFFTKFQCQRLLNQYVHLNFRAINYSAQVFVNGHKTELPKGMFRRHTLDVTDILHPES-NLLALIVHPPDHPGTIPPEGGQGGDHEIGKDVAAQYVQGWDWICPIRDRNTGIWDEVSISVTGPVRIIDPHLVSTFFDDYKRAYLHVTAELENKSTWNTECSVNIQITAELENGVCLVEHLQTENVLIPAQGRIQHTFKPLYFYKPELW 293          
The following BLAST results are available for this feature:
BLAST of FC918235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EBM_LILLO1.161e-13175.17Mannosylglycoprotein endo-beta-mannosidase OS=Lili... [more]
EBM_ARATH2.676e-12873.04Mannosylglycoprotein endo-beta-mannosidase OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA62BH07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA62BH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918235 ID=FC918235; Name=FC918235; organism=Citrus clementina; type=EST; length=929bp
TAAGTACGAGGCGAAATGGGAATGTTATCGGCGTCAATAGGGAAGACGAA
GCTTGACTCGGGATGGCTCGCCGCGAGATCGACGGAGGTTGGACTCAGTG
GGACGCAGCTCACCACGTCACACCCTCCGACTGGGCCCGCCAAGCCCTGG
ATGGAGGCTGTAGTCCCGGGAACGGTCTTGGCAACTCTGGTGAAGAACAA
AGCGGTGCCCGATCCTTTTTATGGGTTGGAGAATGAGATGATCTTAGACA
TAGCTGATTCCGGGAGGGAATACTATACATTCTGGTTTTTTACAACCTTT
CAGTGTAAGCTGTCAGAGAATCAGCATTTGGATCTGAATTTCCGTGCAAT
CAACTACTCTGCCGAAGTTTACTTGAATGGCCAGAAAAGGGTCCTCCAGA
AAGGAATGTTTCGAAGACATTCGCTTGATGTTACTGATATTCTTCATCCT
GATGGTCAAAACTTGCTGGCTGTTCTAGTTCATCCTCCGGATCATCCTGG
GACAATTCCTCCTGAGGGGGGACAAGGTGGTGATCATGAGATTGGAAAAG
ACGTAGCCACACAATACGTAGAGGGCTGGGATTGGATAGCTCCTATAAGG
GATCGGAACACCGGCATATGGGATGAAGTGTCAATTTCTGTCACGGGGCC
TGTGAAAATAATTGATCCCCACCTGGTTTCATCATTTTTTGACAATTACA
CGAGGGTATATCTGCATGCTTCAACTGAGTTGGAAAACAGAAGCACCTGG
GTTGCTGAGTGTTCTTTAAGCATCCAAGTGACTACTGACCTTGAGGGAGG
TGTTTGTCTAGTGGAGCATCTTCAGACTCAACATCTATCAATCTCTCCAG
GAGCACATGTACAGTATACATTTTCTCAGCTCTTTTTCTACAAACCCATT
TTATGGGTGGCCAAATGGGCATGGGAAAG
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