FC918255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC918255 vs. ExPASy Swiss-Prot
Match: VPS53_MOUSE (Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.443e-26 Identity = 82/266 (30.83%), Postives = 139/266 (52.26%), Query Frame = 1 Query: 4 LTSYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE------ETWDIEEGSQNNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR 771 L+ Y +F E ++A LDK +RRYAW+KR++ EE + ++FP W + ++++FC TR +L I+ + +V LL A+QRT FE LA++F G + + +E P + + D +LA +G + K P A N F I+S CFEPHL Y+E +++ L E +++ V + + +EG VL S +LF K+ + +C+ L+ + ++ L +FQ+ L+ YA K+ + LP+ Sbjct: 265 LSEYLVLFQENQDVAWLDKIDRRYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDETTPEMEELALEKGELEQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLSELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPK 519
BLAST of FC918255 vs. ExPASy Swiss-Prot
Match: VPS53_PONAB (Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26 Identity = 84/269 (31.23%), Postives = 140/269 (52.04%), Query Frame = 1 Query: 4 LTSYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE------ETWDIEEGSQNNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPRGGT 780 L+ Y +F E ++A LDK +RRYAWIKR++ EE + ++FP W + + ++FC TR +L I+ + +V LL A+QRT FE LA++F G + + +E P + + D +LA +G+ + K P A N F I+S CFEPHL Y+E +++ L E +++ V + + +EG VL S +LF K+ + +C+ L+ + ++ L +FQ+ L+ YA K+ + LP+ T Sbjct: 265 LSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDEPTPEMEELATEKGDLDQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTT 522
BLAST of FC918255 vs. ExPASy Swiss-Prot
Match: VPS53_HUMAN (Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.802e-26 Identity = 84/269 (31.23%), Postives = 140/269 (52.04%), Query Frame = 1 Query: 4 LTSYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEEKDGNKDLSVPGAGFN-FRRIISSCFEPHLTAYVELEERTLMENLEKLVQE------ETWDIEEGSQNNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPRGGT 780 L+ Y +F E ++A LDK +RRYAWIKR++ EE + ++FP W + + ++FC TR +L I+ + +V LL A+QRT FE LA++F G + + +E P + + D +LA +G+ + K P A N F I+S CFEPHL Y+E +++ L E +++ V + + +EG VL S +LF K+ + +C+ L+ + ++ L +FQ+ L+ YA K+ + LP+ T Sbjct: 265 LSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLE--SPPPSTNPFLEDEPTPEMEELATEKGDLDQPKK-------PKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTT 522
BLAST of FC918255 vs. ExPASy Swiss-Prot
Match: VPS53_CHICK (Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25 Identity = 82/270 (30.37%), Postives = 137/270 (50.74%), Query Frame = 1 Query: 4 LTSYEQIF-EGAELAKLDKTERRYAWIKRRIRTNEEIF-KIFPPSWHVPYLLNIQFCKKTRKQLEGILDNLTERPDVGTLLLALQRTIEFEDELAEKFGGDSRSSEIGLDIEEIGRPENNRQNVSDIRKKYERKLAANQGNSTEE-----KDGNKDLSVPGAGFNFRRIISSCFEPHLTAYVELEERTLMENLEKLVQE------ETWDIEEGSQNNVLHSSTELFFIIKRSLKRCTALTKSQTLLNLFKVFQRILKAYATKLFA-RLPR 771 L+ Y +F E ++A LDK +RRYAWIKR++ EE + ++FP W + + ++FC TR +L I+ + +V LL A+QRT FE LA++F G + L + +PE + + L G T+E D +K F I+S CFEPHL Y+E +++ L E +++ V + +++EG VL S +LF K+ + +C+ L+ + ++ L +FQ+ L+ YA K+ + LP+ Sbjct: 264 LSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPQEWCMTERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLFAIQRTTNFEGLLAKRFSGCT------LADGTVKKPEAPPPSTNPF-------LEDETGTETDEIVIEKSDADKPKKPKVPDNPFHGIVSKCFEPHLYVYIESQDKNLSELIDRFVADFKAQGPPKPNVDEGGA--VLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPK 518 The following BLAST results are available for this feature:
BLAST of FC918255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC918255 ID=FC918255; Name=FC918255; organism=Citrus clementina; type=EST; length=857bpback to top |