FC919337

Overview
NameFC919337
Unique NameFC919337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5890 contig Ccv1_Contig5890:684..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.285e-59
Identity = 112/165 (67.88%), Postives = 137/165 (83.03%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKPGGNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYR-PILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            ++N+ANNV+F+Y++VGNE KP  +FA++LVPA+ NIQ AI+ AGLGNQ+KVST I+TGAL ESFPPS+GSFK DYR   LD +IRFL +N +PL+VN+Y YFA   N + ISLDYALFRS   VV DGSL YR+LFDA +DAVYAALEK GGGSL+IV+SESGWP
Sbjct:  110 IKNYANNVRFRYVSVGNEVKPEHSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFRSPSVVVQDGSLGYRNLFDASVDAVYAALEKAGGGSLNIVVSESGWP 274          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.765e-57
Identity = 112/164 (68.29%), Postives = 132/164 (80.49%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKPGGNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQ-ISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            VRN+AN VKFKYIAVGNE KP  +FA++LVPAMRNIQ AI+ AGL  +IKVST I+TG L E+FPPS GSFK +Y  +L P+IRFL  ++SPLLVNLYPYFA +GN Q I LDYALF +   VV DG+  YR+LFDA+LD VYAALEK GGGSL +VISE+GWP
Sbjct:  116 VRNYAN-VKFKYIAVGNEVKPSDSFAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPSIGSFKSEYNALLYPIIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALFTAPSVVVQDGNFGYRNLFDAMLDGVYAALEKAGGGSLKVVISETGWP 278          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.586e-52
Identity = 105/166 (63.25%), Postives = 124/166 (74.70%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKPGGNFARY---LVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            VRN+ N VKF+YIAVGNE  P    ++Y   L+ AMRNIQ AI+GAGLGNQIKVST IETG   ++ PPS G FK D R  ++P+I FL  NR+PLLVNLYPYFAIA N  I L+YALF S + VV+D    YR+LFDAILDA Y+ALEK  G SL+IV+SESGWP
Sbjct:  102 VRNYGN-VKFRYIAVGNEVSPLNENSKYVPVLLNAMRNIQTAISGAGLGNQIKVSTAIETGLTTDTSPPSNGRFKDDVRQFIEPIINFLVTNRAPLLVNLYPYFAIANNADIKLEYALFTSSEVVVNDNGRGYRNLFDAILDATYSALEKASGSSLEIVVSESGWP 266          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 1.485e-50
Identity = 101/167 (60.48%), Postives = 124/167 (74.25%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKP---GGNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            VRNF   VKF+YIAVGNE  P     +  RYL+PAMRNI+NAI+ AGL N IKVS+ ++   +  SFPPS+GSF+ D R  +DP+I F+    SPLLVN+YPYF+ AGN R ISL YALF +   VV DGSL YR+LFDA+ DAVYAAL + GGGS++IV+SESGWP
Sbjct:  109 VRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRNDVRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALFTAPNVVVQDGSLGYRNLFDAMSDAVYAALSRAGGGSIEIVVSESGWP 275          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 5.280e-48
Identity = 97/167 (58.08%), Postives = 122/167 (73.05%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKP---GGNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            VR+F  +VK KYIAVGNE  P     N A + VPA+ NI  AI  AGLGN IKVST ++   +  S+PPS+GSF+ D R   DP++ FL D R+PLLVN+YPYF+ +GN  QISL YALF +   VV DGS  YR+LFDA+LD+VYAA+++TGGGS+ IV+SESGWP
Sbjct:  103 VRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLDSVYAAMDRTGGGSVGIVVSESGWP 269          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.896e-48
Identity = 95/167 (56.89%), Postives = 123/167 (73.65%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKPGGN---FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQ-ISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            V N+A++VKF+YIAVGNE  P G+   +A+Y++PAM+N+Q+AI  AGL  QIKVST   +  L  S+PPS GSF  D    ++P+I FL +N SPLL N+YPYF+  G+ Q I LDYALF +   VV DGS  Y++LFDA+LDA+YAALEK GG +L IV+SESGWP
Sbjct:   48 VVNYASDVKFRYIAVGNEVLPTGSNAQYAQYVLPAMKNVQSAITSAGLQGQIKVSTATYSSVLGTSYPPSAGSFSSDASSFINPIISFLAENGSPLLANIYPYFSYTGDTQNIRLDYALFTASGVVVQDGSYQYQNLFDALLDALYAALEKAGGSNLKIVVSESGWP 214          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.470e-47
Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKP---GGNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            V++F  +VK KYIAVGNE  P     +   + VPA+ NI  AI  AGLGN IKVST ++   +  S+PPS+GSF+ D R   DP++ FL D R+PLLVN+YPYF+ +GN  QISL YALF +   VV DGS  YR+LFDA+LD+VYAA+E+TGGGS+ IV+SESGWP
Sbjct:   68 VKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWP 234          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.838e-47
Identity = 94/167 (56.29%), Postives = 121/167 (72.46%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKP---GGNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            V++F  +VK KYIAVGNE  P     +   + VPA+ NI  A+  AGLGN IKVST ++   +  S+PPS+GSF+ D R   DP++ FL D R+PLLVN+YPYF+ +GN  QISL YALF +   VV DGS  YR+LFDA+LD+VYAA+E+TGGGS+ IV+SESGWP
Sbjct:   77 VKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNAVVQDGSRQYRNLFDAMLDSVYAAMERTGGGSVGIVVSESGWP 243          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.218e-46
Identity = 93/167 (55.69%), Postives = 120/167 (71.86%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKP---GGNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            V++F  +VK KYIAVGNE  P     +   + VPA+ NI  A+  AGLGN IKVST ++   +  S+PPS+GSF+ D R   DP++ FL D R+PLLVN+YPYF+ +GN  QISL YALF +   VV DGS  YR+LFDA+LD+VYAA+E+TGGGS+ IV+SE GWP
Sbjct:  103 VKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALFTAPNVVVQDGSRQYRNLFDAMLDSVYAAMERTGGGSVGIVVSECGWP 269          
BLAST of FC919337 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.897e-46
Identity = 95/167 (56.89%), Postives = 123/167 (73.65%), Query Frame = -2
Query:    2 VRNFANNVKFKYIAVGNEAKP--GGNF-ARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 490
            V++F  +VK KYIAVGNE  P  G ++   +L PAM NI  AI  AGLGN IKVST ++   +  S+PPS+GSF+ D R  +DP++ FL D R+PLLVN+YPYF+ +GN  QISL Y+LF +   VV DGS  YR+LFDA+LD+VYAALE++GG S+ IV+SESGWP
Sbjct:  111 VKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDARWFVDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLFTAPNVVVQDGSRQYRNLFDAMLDSVYAALERSGGASVGIVVSESGWP 277          
The following BLAST results are available for this feature:
BLAST of FC919337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13A_SOYBN2.285e-5967.88Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13B_PRUPE4.765e-5768.29Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13H_TOBAC1.586e-5263.25Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
GUB_NICPL1.485e-5060.48Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13B_SOLLC5.280e-4858.08Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E13B_VITVI6.896e-4856.89Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E133_SOLTU4.470e-4756.89Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E131_SOLTU5.838e-4756.29Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E132_SOLTU2.218e-4655.69Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E13B_NICPL2.897e-4656.89Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]

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Properties
Property NameValue
Genbank descriptionC16000A10SK PCR Citrus clementina cDNA clone C16000A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919337 ID=FC919337; Name=FC919337; organism=Citrus clementina; type=EST; length=491bp
TTGGCCACCCACTTTCGGAGATGACGATGTCCAGAGACCCCCCGCCGGTT
TTCTCCAGCGCGGCGTAAACAGCATCCAAGATGGCGTCAAAAAGACTCCG
GTAACTTAACGATCCGTCGGAAACGACCGTCTGTTGTGACCTAAATAGTG
CATAATCCAGAGATATTTGGCGGTTACCAGCAATTGCGAAGTAAGGGTAC
AAGTTGACAAGCAAGGGGGATCTGTTATCGTTGAGGAAGCGAATGAGGGG
ATCAAGAATGGGTCTGTAATCTTGCTTAAATGAGCCTCTTGACGGAGGGA
AAGATTCGTCAAGAGCTCCAGTTTCGATAACAGTGGAAACCTTGATTTGG
TTTCCAAGGCCGGCTCCGTTGATGGCGTTTTGTATGTTTCTCATGGCGGG
AACAAGGTACCGAGCGAAGTTACCTCCAGGTTTTGCTTCATTTCCTACAG
CAATGTATTTGAACTTGACATTGTTAGCAAAATTTCGGACG
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