FC920201

Overview
NameFC920201
Unique NameFC920201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8167 contig Ccv1_Contig8167:88..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920201 vs. ExPASy Swiss-Prot
Match: HPPD_ARATH (4-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.817e-51
Identity = 96/155 (61.94%), Postives = 115/155 (74.19%), Query Frame = 2
Query:    8 SDRFRVNRFHHVEFWCTDATNTSRHFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPNSPXXXXXXXXXXXXXXLPTFDHAACRSFSASHGLAARSIAVEIEDTDVAFYTRVAHRAKPSSPHVILDNLDVIAEVQLYGDVVLRYVSYK 472
            SD+F+V RFHH+EFWC DATN +R FSWGLGM   AKSDLSTGN VHASYLL SGDLRF+FTAP SP              +P+FDH +CRSF +SHGL  R++A+E+ED + AF   VA+ A PSSP ++L+    IAEV+LYGDVVLRYVSYK
Sbjct:   39 SDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYK 193          
BLAST of FC920201 vs. ExPASy Swiss-Prot
Match: HPPD_DAUCA (4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.396e-45
Identity = 91/154 (59.09%), Postives = 110/154 (71.43%), Query Frame = 2
Query:    8 SDRFRVNRFHHVEFWCTDATNTSRHFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPNSPXXXXXXXXXXXXXXLPTFDHAACRSFSASHGLAARSIAVEIEDTDVAFYTRVAHRAKPSSPHVILDNLDVIAEVQLYGDVVLRYVSY 469
            SD F V RFHH+EFWC DATNTSR FSWGLGMP+VAKSDLSTGN+VHASYL+RS +L FVFTAP SP              +P+F  +   SF+A HGLA R+IA+E+ D   AF   VA  A+P+S  V LD+   +AEV+LYGDVVLR+VS+
Sbjct:   38 SDHFAVKRFHHIEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSVHASYLVRSANLSFVFTAPYSP----STTTSSGSAAIPSFSASGFHSFAAKHGLAVRAIALEVADVAAAFEASVARGARPASAPVELDDQAWLAEVELYGDVVLRFVSF 187          
BLAST of FC920201 vs. ExPASy Swiss-Prot
Match: HPPD_SOLSC (4-hydroxyphenylpyruvate dioxygenase OS=Solenostemon scutellarioides PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.152e-44
Identity = 90/154 (58.44%), Postives = 111/154 (72.08%), Query Frame = 2
Query:    8 SDRFRVNRFHHVEFWCTDATNTSRHFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPNSPXXXXXXXXXXXXXXLPTFDHAACRSFSASHGLAARSIAVEIEDTDVAFYTRVAHRAKPSSPHVILDNLD-VIAEVQLYGDVVLRYVS 466
            SD F V+RFHHVEFWC DATNTSR FSWGLGMP+VAKSDLSTGN+ HASYLLRSG+L FVFTAP SP              +PTF  +  R+F++SHGLA R++A++++    A+   V+  AKP SP V+L + +  IAEV LYGD VLR+VS
Sbjct:   31 SDHFPVHRFHHVEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSAHASYLLRSGELSFVFTAPYSP-----SLAEPSSASIPTFSFSDHRAFTSSHGLAVRAVAIQVDSASSAYSAAVSRGAKPVSPPVVLADCETAIAEVHLYGDTVLRFVS 179          
BLAST of FC920201 vs. ExPASy Swiss-Prot
Match: HPPD_HORVU (4-hydroxyphenylpyruvate dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.972e-33
Identity = 75/156 (48.08%), Postives = 94/156 (60.26%), Query Frame = 2
Query:    8 SDRFRVNRFHHVEFWCTDATNTSRHFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPNSPXXXXXXXXXXXXXXLPTFDHAACRSFSASHGLAARSIAVEIEDTDVAFYTRVAHRAKPSSPHVILDNLDVIAEVQLYGDVVLRYVSYKD 475
            SDRF    FHHVEFWC DA + +  F++ LG P+ A+SDLSTGN+ HAS LLRSG L F+FTAP +               LP+F   A R FSA HG+A RS+A+ + D   AF       A+P+   V L      AEV+LYGDVVLR+VS+ D
Sbjct:   34 SDRFHTLSFHHVEFWCADAASAAGRFAFALGAPLAARSDLSTGNSAHASQLLRSGSLAFLFTAPYA------NGCDAATASLPSFSADAARRFSADHGIAVRSVALRVADAAEAFRASRRRGARPAFAPVDLGRGFAFAEVELYGDVVLRFVSHPD 183          
The following BLAST results are available for this feature:
BLAST of FC920201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HPPD_ARATH1.817e-5161.944-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis... [more]
HPPD_DAUCA7.396e-4559.094-hydroxyphenylpyruvate dioxygenase OS=Daucus caro... [more]
HPPD_SOLSC2.152e-4458.444-hydroxyphenylpyruvate dioxygenase OS=Solenostemo... [more]
HPPD_HORVU4.972e-3348.084-hydroxyphenylpyruvate dioxygenase OS=Hordeum vul... [more]
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Properties
Property NameValue
Genbank descriptionC32005C09EF RVDevelop1 Citrus clementina cDNA clone C32005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920201 ID=FC920201; Name=FC920201; organism=Citrus clementina; type=EST; length=497bp
TACCCCATCGGACCGGTTCCGAGTGAACCGCTTCCACCATGTCGAGTTCT
GGTGCACTGACGCCACCAATACGAGTCGTCATTTCTCCTGGGGACTCGGC
ATGCCCATTGTCGCCAAATCGGACTTGTCTACCGGCAACACTGTCCATGC
ATCTTACCTCTTACGTTCTGGCGACCTCCGTTTCGTCTTTACAGCGCCGA
ATTCCCCTTCAATCTCCGACGCCGCCGATGCTGGCAACTCCTCATCATCT
CTCCCGACTTTCGACCACGCAGCTTGCCGCAGTTTCTCCGCGTCTCATGG
GCTCGCCGCGCGGTCGATTGCTGTTGAAATTGAAGACACCGACGTTGCTT
TCTACACCAGAGTGGCTCACCGTGCTAAGCCCTCCTCTCCTCATGTGATT
CTCGATAACCTTGATGTGATTGCCGAGGTCCAGTTATACGGCGACGTCGT
TTTGCGTTATGTTAGTTATAAAGATAAAGCGAATCATCTTGATTTCC
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