FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 4.928e-68
Identity = 127/167 (76.05%), Postives = 141/167 (84.43%), Query Frame = 2
Query:    2 AATITGVGVGLGFSCSSKLTKRIXXXXXXXXXXVKMSVSVEEQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            +AT+TG G  LGFSCSSK++KR+          +KMSVSV+E+KK+ +L+ SEEAFN AK LMPGGVNSPVRAFKSVGGQP+  DSVKGS MWDIDGNEYIDYVGSWGPAIIG  DD+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPS EM  FVNSGT+AC
Sbjct:    2 SATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_BRANA (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 3.194e-67
Identity = 128/167 (76.65%), Postives = 141/167 (84.43%), Query Frame = 2
Query:    2 AATITGVGVGLGFSCSSKLTKRIXXXXXXXXXXVKMSVSVEEQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            +AT+TG G  LGFSCSSK++KR+          +KMSVSV+E+KK+ TL+ SEEAFN AK LMPGGVNSPVRAFKSVGGQP+  DSVKGS MWDIDGNEYIDYVGSWGPAIIG  DD+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPS EM  FVNSGT+AC
Sbjct:    2 SATLTGSGTALGFSCSSKISKRVSSSPSTRCS-IKMSVSVDEKKKSFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 167          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 4.317e-64
Identity = 125/167 (74.85%), Postives = 136/167 (81.44%), Query Frame = 2
Query:    2 AATITGVGVGLGFSCSSKLTKRIXXXXXXXXXXVKMSVSVEEQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            AAT+TG G+ LGFSCS+K +KR           +KMSVSVEE+ K  TL+ SEEAFN AK LMPGGVNSPVRAFKSVGGQP+  DS KGS + DIDGNEYIDYVGSWGPAIIG  DD+VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPS EM  FVNSGT+AC
Sbjct:    2 AATLTGSGIALGFSCSAKFSKRASSSSNRRC--IKMSVSVEEKTKKFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 166          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SOYBN (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.294e-57
Identity = 118/167 (70.66%), Postives = 127/167 (76.05%), Query Frame = 2
Query:    5 ATITGVGVGLGFSCSSKLTKRIXXXXXXXXXXVKMSVSVEEQKKN-ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            + ITG  + LG S SS    R           V M+VS++ +  N +TL  SEEAF  AKELMPGGVNSPVRAFKSVGGQPI  DSVKGS MWDIDGNEYIDYVGSWGPAIIG  DDQVLAALGETMKKGTSFGAPCLLEN LAE+VI AVPS EM  FVNSGT+AC
Sbjct:    4 SAITGARLTLGMSLSSSTRSRT----------VAMAVSIDPKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENTLAELVIDAVPSIEMVRFVNSGTEAC 160          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SOLLC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.913e-57
Identity = 118/170 (69.41%), Postives = 128/170 (75.29%), Query Frame = 2
Query:   29 GLGFSCSSKLTK------------RIXXXXXXXXXXVKMSVSVEEQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            G+G S  SKLTK            R           ++M+ SV+E+KK  TL+ SEEAF+ AKELMPGGVNSPVRAFKSVGGQPI  DSVKGS M DIDGNEYIDYVGSWGPAIIG  DD+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPS EM  FVNSGT+AC
Sbjct:    6 GVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSATIRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEAC 175          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_TOBAC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 8.718e-57
Identity = 110/134 (82.09%), Postives = 118/134 (88.06%), Query Frame = 2
Query:  101 VKMSVSVEEQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            +KM+ SV+E+KK  TL+ SEEAF+ AKELMPGGVNSPVRAFKSVGGQPI  DSVKGS M DIDGNEYIDYVGSWGPAIIG  DD+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPS EM  FVNSGT+AC
Sbjct:   39 IKMTASVDEKKKTFTLQKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEAC 172          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ORYSJ (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.644e-55
Identity = 111/167 (66.47%), Postives = 124/167 (74.25%), Query Frame = 2
Query:    2 AATITGVGVGLGFSCSSKLTKRIXXXXXXXXXXVKMSVSVEEQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            AA+     V  G S      +            V+ ++SVE+ +K  T++ SEE FN AKELMPGGVNSPVRAFKSVGGQPI FDSVKGS MWD+DGNEYIDYVGSWGPAIIG  DD V AAL ET+KKGTSFGAPC+LENVLAEMVISAVPS EM  FVNSGT+AC
Sbjct:    6 AASAAAAAVASGISARPVAPRPSPSRARAPRSVVRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSRMWDVDGNEYIDYVGSWGPAIIGHADDTVNAALIETLKKGTSFGAPCVLENVLAEMVISAVPSIEMVRFVNSGTEAC 172          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_HORVU (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 1.392e-54
Identity = 106/134 (79.10%), Postives = 117/134 (87.31%), Query Frame = 2
Query:  101 VKMSVSVEEQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            V+ +VS++E  K  T++ SEE FN AKELMPGGVNSPVRAFKSVGGQPI FDSVKGSHMWD+DGNEYIDYVGSWGPAIIG  DD+V AAL ET+KKGTSFGAPC LENVLA+MVISAVPS EM  FVNSGT+AC
Sbjct:   32 VRAAVSIDE--KAYTVQKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDVDGNEYIDYVGSWGPAIIGHADDKVNAALIETLKKGTSFGAPCALENVLAQMVISAVPSIEMVRFVNSGTEAC 163          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNP2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemL PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.380e-46
Identity = 88/116 (75.86%), Postives = 102/116 (87.93%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F+ A++LMPGGV+SPVRAFKSVGGQPI FD VKGS +WD+DGNEYIDYVG+WGPAI G  +D+V AAL ET++KGTSFGAPCL EN+LAEMVI+AVPS EM  FVNSGT+AC
Sbjct:   11 SEEIFSAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGSRVWDVDGNEYIDYVGTWGPAICGHANDEVNAALRETLEKGTSFGAPCLKENILAEMVINAVPSIEMVRFVNSGTEAC 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_THEEB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemL PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 5.861e-45
Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+E F  A++LMPGGV+SPVRAFKSVGGQPI FD VKG+H+WD+DGN+YIDYVGSWGPAI+G    +V+ AL   ++KGTSFGAPCLLEN+LAEMVI+AVPS EM  FVNSGT+AC
Sbjct:   16 SQEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLENILAEMVIAAVPSVEMVRFVNSGTEAC 131          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_ARATH4.928e-6876.05Glutamate-1-semialdehyde 2,1-aminomutase 1, chloro... [more]
GSA_BRANA3.194e-6776.65Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA2_ARATH4.317e-6474.85Glutamate-1-semialdehyde 2,1-aminomutase 2, chloro... [more]
GSA_SOYBN2.294e-5770.66Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SOLLC3.913e-5769.41Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_TOBAC8.718e-5782.09Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_ORYSJ1.644e-5566.47Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_HORVU1.392e-5479.10Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SYNP22.380e-4675.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_THEEB5.861e-4572.41Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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