FC920275

Overview
NameFC920275
Unique NameFC920275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920275_ssr320 microsatellite FC920275_ssr320:320..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SPIOL (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.014e-40
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 2
Query:  407 QKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLTT 691
            +K  V VK ++KPRLVLKFIWMEKNIGLALDQTIPG+GT+PLS Y+FWPRKDAWEELK  LE+KPWISQK MIILLNQ TDIINLWQQSGGNL +
Sbjct:   85 EKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDIINLWQQSGGNLAS 179          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP31_ARATH (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.495e-39
Identity = 98/209 (46.89%), Postives = 117/209 (55.98%), Query Frame = 2
Query:   68 MLSSMALQSTVNGAFTTRSSFPSQKLTVKPTKTT-ILHQNRTKPISRNQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKVQTKSLSPSLHMCVYVYCFT**KLCVXXXXSSGQKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLTT 691
            M+SSMAL ST     +  SSF SQ   +  T +  + H   TKPIS  ++++                           T + T   +P   + V                         VK  EK R+VLKF+WMEKNIGL LDQ +PG+GTIPLS YFFWPRKDAWEELK+TLE+KPWISQK MIILLNQ TDIINLWQQSGGNLT+
Sbjct:    1 MMSSMALSST-----SLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETV--------------TGIDTSDNTPQQTIKV-------------------------VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNLTS 165          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP32_ARATH (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 88/212 (41.51%), Postives = 116/212 (54.72%), Query Frame = 2
Query:   80 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVXXXXXXXXXXXXXXXXXXXXXXXXPVETKVQTKSLSPSLHMCVY--VYCFT**KLCVXXXXSSGQ-------KAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLT 688
            MA+Q+  + +F  R++ PSQKL+ KP     L   + KP SR                              +      +   P+ H C+   ++ +    L         +       K  V VK LEKP++VLKF+WM+K+IG+ALD  IPG+GTIPLS Y+FWPRKDAWEELKT LESKPWIS+   + LLNQ TDIINLWQ SGG+L+
Sbjct:    1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSRPS----------------------------LSCSTWNQGQIPARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINLWQSSGGDLS 183          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_HORVU (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 2
Query:  419 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLTT 691
            V V + + P LVLKFIWMEKNIG+ALDQ +PG G+IPLS Y+FWPRKDAWEEL+  LE K WISQK MIILLNQ TDIINLWQQ GG+L+T
Sbjct:   91 VEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLST 181          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PORYE (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra yezoensis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  419 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            + +K L K    LK +W+E NI +A+DQ + G GT PL+ YFFWPR DAWEELK  LESKPWI+++  I LLN+ T++IN WQ+ G
Sbjct:    1 MEIKNLSK--FTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELLNKTTEVINYWQEEG 83          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_CYAP4 (Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=Cyan7425_0465 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 2
Query:  422 SVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682
            ++ ++   + +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LKT LE K WIS+   I LLN+ TDIIN WQ+ G N
Sbjct:    5 TILEVSLSQFILKVLWLDSNVALAVDQVV-GKGTSPLTSYFFWPRADAWEQLKTELEKKTWISEADRIALLNRATDIINYWQEEGRN 90          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PORPU (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea GN=ycf65 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            +  LK +W+E NI +A+DQ + G GT PL+ YFFWPR DAWEELK  LESKPWI+++  I LLN+ T++IN WQ+ G
Sbjct:    3 KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELLNKTTEVINYWQEEG 78          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_THEEB (Probable 30S ribosomal protein PSRP-3 OS=Thermosynechococcus elongatus (strain BP-1) GN=tlr0301 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 VSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682
            +S ++LE  R  L+ +W+EK++ +A+DQ + G GT PL+ YFFWPR DAWE LK  LE K WI++   I LLN+ T+IIN WQ+ G N
Sbjct:    3 ISFRRLELSRFTLRVLWLEKDVAIAVDQIV-GKGTSPLTSYFFWPRTDAWELLKAELEKKSWITEAERIELLNRATEIINYWQEEGKN 89          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_MESVI (Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma viride GN=ycf65 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQ 670
            + VLKF+W+EKN+ + +DQ +   G  P+++YFFWPRKDAWEELK  L +KPWIS    I LLNQ TD+IN WQ+
Sbjct:   20 KFVLKFLWLEKNLAVTVDQ-VTNRGNSPITEYFFWPRKDAWEELKDALANKPWISYDESIALLNQTTDVINYWQE 93          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_ANAVT (Probable 30S ribosomal protein PSRP-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_3866 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682
            + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK  LESK WIS    + LLN+ T++IN WQ+ G N
Sbjct:    3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 80          
The following BLAST results are available for this feature:
BLAST of FC920275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_SPIOL1.014e-4081.0530S ribosomal protein 3, chloroplastic OS=Spinacia... [more]
RRP31_ARATH9.495e-3946.8930S ribosomal protein 3-1, chloroplastic OS=Arabid... [more]
RRP32_ARATH4.411e-3641.5130S ribosomal protein 3-2, chloroplastic OS=Arabid... [more]
RRP3_HORVU1.086e-3473.6330S ribosomal protein 3, chloroplastic OS=Hordeum ... [more]
RRP3_PORYE1.055e-2154.65Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_CYAP41.377e-2151.72Probable 30S ribosomal protein PSRP-3 OS=Cyanothec... [more]
RRP3_PORPU2.350e-2157.14Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_THEEB8.928e-2151.14Probable 30S ribosomal protein PSRP-3 OS=Thermosyn... [more]
RRP3_MESVI8.928e-2157.33Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_ANAVT1.166e-2054.43Probable 30S ribosomal protein PSRP-3 OS=Anabaena ... [more]

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Properties
Property NameValue
Genbank descriptionC32006B11EF RVDevelop1 Citrus clementina cDNA clone C32006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920275 ID=FC920275; Name=FC920275; organism=Citrus clementina; type=EST; length=699bp
TCGCCGGGGGAACTGGTTGATAATAAACAAATCTGTGCTTGCTCTCCTTC
TCTTTGAAGAACACAAAATGTTATCATCAATGGCACTTCAATCTACTGTT
AATGGTGCATTCACCACACGCTCCTCATTCCCTTCCCAAAAACTCACTGT
CAAACCCACCAAAACCACCATTCTTCACCAAAATAGAACCAAACCCATTT
CAAGAAACCAAAGGCTCGTTGCTTTAGCAACCCCAGAATCACTCACAGCT
GAAGAAGCAACAACAACATCCACAGAGACCATCCCAGCAACCCCAGTAGA
AACTAAGGTCCAAACCAAATCTCTCTCTCCCTCTCTACATATGTGTGTTT
ATGTGTACTGTTTCACTTAATAAAAGTTGTGTGTTTTCTTTTTCTTTTCT
TCTGGGCAGAAGGCGGGGGTGTCAGTGAAGCAATTGGAGAAGCCAAGGCT
GGTATTGAAGTTTATATGGATGGAGAAGAACATTGGTCTAGCTCTTGACC
AGACGATACCTGGGTATGGCACCATTCCTTTGAGTCAATACTTCTTTTGG
CCGAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCTTGAGAGCAAACC
CTGGATTTCCCAGAAAATGATGATTATACTTCTAAATCAGGNCACTGATA
TTATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACTACTTAGTTGGA
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