FC920310

Overview
NameFC920310
Unique NameFC920310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig49 contig Ccv1_Contig49:43..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920310 vs. ExPASy Swiss-Prot
Match: RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.617e-39
Identity = 97/207 (46.86%), Postives = 118/207 (57.00%), Query Frame = 1
Query:   64 MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGL-----TPFQHRSLISSTLGPTNW--SHYRHFSSNKNXXXXXXXXXXXXXXXXXXXXXXXXXXIGDTVPDLGREYTLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVV 663
            MA  RC   LSR A  + S+    ++     I   G      T   +RSL  +    ++W  S  R FSSN                                  ++ REY+  EK  EA EIGYKV+GPL+ S+R+FK YEP FA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL L KVLLLGS  QTIIGRP++PDA VHAVV
Sbjct:    1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSGTSISHGTVIPNRSLTRNLPWYSHWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFED----SADMEVEREYSPAEKVEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDATVHAVV 203          
BLAST of FC920310 vs. ExPASy Swiss-Prot
Match: RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  466 EPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVV 663
            E  FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLL+G++  T IG P+V +AAVHAVV
Sbjct:  121 EEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVV 186          
BLAST of FC920310 vs. ExPASy Swiss-Prot
Match: RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  385 EKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLILNKVLLLGSQHQTIIGRPMVPDAAVHAVV 663
            E E E  +I   V+  + +      K E  FAV+ +G  Q+ V  G  ++T+RLK   V+D+++LNKVLL+G++  T IG+P+V +A VHAVV
Sbjct:   71 EAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVV 163          
The following BLAST results are available for this feature:
BLAST of FC920310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RM21_ARATH8.617e-3946.8650S ribosomal protein L21, mitochondrial OS=Arabid... [more]
RK21_SPIOL8.122e-1359.0950S ribosomal protein L21, chloroplastic OS=Spinac... [more]
RK21_ARATH1.385e-1240.8650S ribosomal protein L21, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC32006F12EF RVDevelop1 Citrus clementina cDNA clone C32006F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920310 ID=FC920310; Name=FC920310; organism=Citrus clementina; type=EST; length=663bp
GACATTTGTCTATTTCACTAAAACCCTAGTGACGCCAAACGCCGTGAGCG
CCACCACCCAGCCATGGCTCACCGACGGTGCCTCCACGTGCTCAGTCGCC
ACGCCGCGGCTCTTCTATCACTCAAGACTCCCCCAACACTTCCTTTCTCT
ACATCAATTTCCCTAAAAGGCCTAACACCATTCCAACACCGGTCCCTCAT
TTCTTCTACGTTGGGACCCACTAACTGGTCTCACTATCGGCATTTCTCCT
CCAACAAAAACGATGACGAAGGGGAAGACGTGGACGAAGACGAAGACGAA
GACGAAGAGACTGCCGATGAGAGTTACGAGGGAGAGGAGATTGGTGATAC
GGTGCCGGATTTGGGGAGGGAGTACACGCTGGAAGAGAAGGAAGCGGAGG
CGGCGGAGATTGGGTATAAAGTGCTGGGTCCACTGCGGAAATCTGATCGG
GTTTTTAAAAAATATGAACCGGCTTTTGCTGTTGTTCAGATTGGGTCGCA
CCAGTTTAAGGTGAGCAATGGGGATTCGATTTTTACCGAGAGATTGAAGT
TCTGTGAGGTGAATGACAAGTTGATTTTGAACAAGGTTCTGTTGTTGGGT
TCACAACATCAAACGATCATTGGTAGGCCCATGGTTCCAGATGCAGCCGT
TCATGCAGTTGTT
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