FC920332

Overview
NameFC920332
Unique NameFC920332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.265e-70
Identity = 131/153 (85.62%), Postives = 139/153 (90.85%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYCS 655
            MATRL FEN+CEVGVFSKLTNAYCLVAIGGSE+FYSTFE ELAD  PVVKTSI GTRIIG     NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VALTHTDLD+ETEE+IADVLGVEVF QTIAG ILVGSYC+
Sbjct:    1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCA 153          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.210e-63
Identity = 117/153 (76.47%), Postives = 132/153 (86.27%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYCS 655
            MATR  FENS E+GVFSKLTN YCLVA+GGSE+FYS FEAEL D  P+V T+I GTRIIGR+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+G ILVGSYCS
Sbjct:    1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCS 153          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.609e-61
Identity = 111/154 (72.08%), Postives = 129/154 (83.77%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYCSF 658
            MA R  FEN+CEVG F+KLTNAYCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC F
Sbjct:    1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVF 154          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.287e-60
Identity = 109/154 (70.78%), Postives = 128/154 (83.12%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYCSF 658
            MA R  FEN+CE+G F+KLTN YCLVAIGGSE+FYS FE EL+D  PVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC F
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVF 154          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.655e-60
Identity = 111/153 (72.55%), Postives = 130/153 (84.97%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYCS 655
            MA R  FENS E+GVFS LTN+Y LVA+GGSE+FYS FEAEL DV PVV T+IGGTRIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEE+IADVL VEVFRQT+AG +L GSYC+
Sbjct:    1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCA 153          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.483e-59
Identity = 113/153 (73.86%), Postives = 129/153 (84.31%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYCS 655
            MATRL +ENSC+VGVF KLTN YCLV   GS+ F  T E  LAD  PVV+TSI GTRI+GRL AGNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEE+IADVLGVEVFRQT++G +LVG+YC+
Sbjct:    1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCA 153          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.483e-59
Identity = 108/154 (70.13%), Postives = 127/154 (82.47%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYCSF 658
            MA R  FEN+CE+G F+KLTN+YCLVAIGGSE+FYS FE ELA   PVV  SI G RIIGR+C GN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC F
Sbjct:    1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVF 154          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.796e-58
Identity = 110/151 (72.85%), Postives = 128/151 (84.77%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSY 649
            MA R+ FEN+ ++GVF+KLTN YCLVAIGGSE+FYS FEAEL D  PVV  ++GG RIIGRL  GN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEE+IADVL VEVFRQTIA   LVGSY
Sbjct:    1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSY 151          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.457e-54
Identity = 106/155 (68.39%), Postives = 128/155 (82.58%), Query Frame = 2
Query:  197 MATRLMFENS-CEVGVFSKLTNAYCLV-AIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYCS 655
            MATRL ++N+ CE+GVFSKLTNAYCLV A   S +F++ +E++L  V P+V TSIGG+  IG LC GNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEE+I+DVLGVEV+RQTIA   LVGSYCS
Sbjct:    1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCS 155          
BLAST of FC920332 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.486e-51
Identity = 95/152 (62.50%), Postives = 123/152 (80.92%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGYILVGSYC 652
            MA R+ +E S +VGVF  LTN+YCLV +GG+++FYS  EAEL+D+ PVV TSI  TRI+GRL  GN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A   LVGSYC
Sbjct:    1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYC 152          
The following BLAST results are available for this feature:
BLAST of FC920332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF6_BETVU9.265e-7085.62Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_YEAST2.210e-6376.47Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_MOUSE4.609e-6172.08Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN2.287e-6070.78Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_SCHPO6.655e-6072.55Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DICDI1.483e-5973.86Probable eukaryotic translation initiation factor ... [more]
IF6_BOVIN1.483e-5970.13Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_DROME2.796e-5872.85Probable eukaryotic translation initiation factor ... [more]
IF6_ARATH5.457e-5468.39Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_CAEEL1.486e-5162.50Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC32007A01EF RVDevelop1 Citrus clementina cDNA clone C32007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920332 ID=FC920332; Name=FC920332; organism=Citrus clementina; type=EST; length=660bp
GATAGAAAGTAGGAAGCAGAAACCCTCTTCTCATCTCATATTGGGTGGGG
TACTGGGGTTTGTTTCCGGCCGAAAGGGTAGCAAGTGAAGGGCCGCCTCA
TCATCATTATCATCAGCGCTTTGGCATTTCGAGTTTTCGACATCGTTTTC
CGTCATTTTGCTTTTTAATCAATTCAATTTCTGTCAATCTGTAATCATGG
CAACCAGGCTTATGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCCAAG
CTCACTAATGCTTATTGCTTGGTTGCAATAGGAGGTTCTGAAAGCTTCTA
CAGCACATTTGAGGCTGAGTTAGCAGATGTTTTTCCTGTTGTTAAAACAT
CTATTGGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAAT
GGGCTTCTCTTGCCGCACACTACCACAGACCAAGAACTTCAACACTTGAG
GAACAGCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTAT
CTGCCCTGGGCAACTGTATAGCATGCAACGACCATGTTGCTCTTACACAC
ACAGATCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGT
AGAAGTTTTTAGGCAGACAATTGCTGGNTATATCCTTGTTGGCAGTTACT
GTTCCTTCTC
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