FC920353

Overview
NameFC920353
Unique NameFC920353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920353 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 3 
Query:  282 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILH 707
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG   +L+
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLN 248
[Close]
BLAST of FC920353 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 47/144 (32.64%), Postives = 79/144 (54.86%), Query Frame = 3 
Query:  282 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILH 707
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G SAGG   +L+
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLN 241
The following BLAST results are available for this feature:
BLAST of FC920353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE2.580e-1533.33Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN3.369e-1532.64Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionC32007C02EF RVDevelop1 Citrus clementina cDNA clone C32007C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920353 ID=FC920353; Name=FC920353; organism=Citrus clementina; type=EST; length=707bp
GGAACAAGAAGCTAGCTACATCCCTTGATCCTTTCTCCTTGAGCTCCCAA
AAAATTGCCATTACTATTTCTTCCCAATGCACTAACTTGGGCTCCTTTTG
CATACTCTTTAAACTAGTCCCATTTGCAGATAATTTTTTTTTTTGGCCTC
ATTTCAGAATGGTTGCTGCAAGAATGGGCCAATGGTTGAATCTTTTAGTA
TGTGCACTCATATTACTGAAAGCTGACGGCTTTAATGTAGGAATCACTTA
TGTTGAGAATGCTGTAGCGAAAGGAGCTGTTTGTTTGGATGGTAGCCCGC
CTGCTTACCATTTTGATAAGGGGTTTGGTGCTGGGATCAATAATTGGTTG
GTTCACATTGAGGGAGGAGGATGGTGCAACAATGTCACAACTTGTCTTGA
ACGTAAGAAAACCCGTTTAGGTTCATCTAAGCAAATGGTCAAGGTAGTTG
CTTTCTCTGGGATGCTGAGCAACAAGCAAAAATTTAACCCAGACTTCTAC
AATTGGAATAGAATCAAGGTTAGATACTGTGATGGTGCATCGTTTACTGG
AGATGTGGAGGCTGTCAATCCAGCAAATAACCTTCACTTCAGAGGAGCAA
GGGTTTTTCAAGCTGTCATGGAGGATCTAATGGCTAAAGGGATGAAAAAT
GCTCAAAATGCTGTTCTTTCTGGCTGCTCAGCTGGGGGGTTGACTTCAAT
TTTGCAT
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