FC920447

Overview
NameFC920447
Unique NameFC920447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14146 contig Ccv1_Contig14146:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUDT2_ARATH (Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.246e-42
Identity = 86/166 (51.81%), Postives = 108/166 (65.06%), Query Frame = 1
Query:  208 MSSDPISTNLISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKREVLVVQEKHGALKGTGVWKLPTGTIEEGEDI 705
            MS+   STN +S E+   ++P           +V D +GGV  +M  PMD  +F             QGK+GVWIKLP +L  L + AV+EGF +HHAE DYLMLVYWIP+  D LPANASHRVG+GAFV+N+ +EVLVVQEK G  +G G+WK PTG + EGEDI
Sbjct:    1 MSASSSSTNPMSREDATTLLP-----------SVQDKYGGVMTEMTHPMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETAVKEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQGQGIWKFPTGVVNEGEDI 155          
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUDT7_ARATH (Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 84/138 (60.87%), Postives = 98/138 (71.01%), Query Frame = 1
Query:  295 LLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKREVLVVQEKHGALKGTGVWKLPTGTIEEGEDI 705
            LL    D + GVTV M +PMDS+VF            ++GK+G+WIKLP+ LANLV+ AV EGFRYHHAEP+YLMLV WI ET D +PANASH VG GA V+N N +EVLVVQE+ G  K   VWKLPTG I EGEDI
Sbjct:   10 LLEGETDNYDGVTVTMVEPMDSEVFTESLRASLSHWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAEPEYLMLVSWISETPDTIPANASHVVGAGALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGEDI 147          
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUD10_ARATH (Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 78/140 (55.71%), Postives = 99/140 (70.71%), Query Frame = 1
Query:  292 ELLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKREVLVVQEKHGALKGTGVWKLPTGTIEEGEDICA 711
            E+L  V D +GGV V+MK PMD+K F             QGK+GVW+ LP+   NLV+PAV+EGFRYHHAEP YLMLVYWIPE    +P NASHRV VGA V+N+ +E     EK+G+L G+G+WK+PTG ++EGE+I A
Sbjct:   18 EVLPFVDDDYGGVIVEMKTPMDTKNFVAALRDSFEQWRLQGKKGVWLNLPLSHVNLVEPAVKEGFRYHHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNKE-----EKYGSLCGSGIWKIPTGVVDEGEEIFA 152          
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUDT8_ARATH (Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.248e-34
Identity = 77/156 (49.36%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  244 VEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKK-PMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETA-DVLPANASHRVGVGAFVMNNKREVLVVQEKHGALKGTGVWKLPTGTIEEGEDI 705
            V  +   +    V+   LL A  D +GGV VD  K P +   F            ++GK+GVW+KLP+E + LV  A++EGF YHHAE  Y+ML YWIPE    +LPANASH+VGVG FV+N  +EVLVVQEK+ A   TG+WKLPTG I E E+I
Sbjct:   78 VNLKSRTLMSSAVKERSLLDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINESEEI 233          
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUDT6_ARATH (Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.615e-33
Identity = 73/138 (52.90%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  295 LLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNK-REVLVVQEKHGALKGTGVWKLPTGTIEEGEDI 705
            LL  V D +GGV V++ +PM  + F             QG +G+W+KL   L NL+ PA  EGF  HHAE +Y ML  WI +    LPANASHR+GVGAFV+N K +EVLVVQE  G  KGTGVWKLPTG ++EGE+I
Sbjct:   10 LLQGVPDNYGGVKVNLTEPMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAKAEGFVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTGVWKLPTGVVKEGENI 147          
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUDT5_ARATH (Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 74/177 (41.81%), Postives = 103/177 (58.19%), Query Frame = 1
Query:  205 NMSSDPISTNLISVEEEQ------NMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKV--FXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKREVLVVQEKHGALKGTGVWKLPTGTIEEGEDICA 711
            +M  +    +L+  EE++      N+M  +      LL    D  GG  V++ +     +  F             QGK+G+WIKLP EL++LV  A+++GF YHHAE +Y+ML +W+PE    LP NASHR+G+GAFV+N   E+LVVQE  G  K   VWK+PTGTI+EGE I A
Sbjct:   19 SMDGEAFEISLLDGEEDRFGGTVVNLMDGEAFEI-SLLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLVDTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSGYFKDKNVWKVPTGTIKEGESIWA 194          
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUDT6_RAT (Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  313 DLHGGVTVDMKKP-----MDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKREVLVVQEKHGALKGTGVWKLPTGTIEEGEDI 705
            D  GG++V + +      +D+  F             +G+   W+ +PI  ++ + PA   GF +HHAEP    L  W+ E    LP  A+H+VGV   V + + R+VLVVQ+++   K   +WK P G  E GEDI
Sbjct:   48 DRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFIAPAASLGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRN---KLKNMWKFPGGLSEPGEDI 181          
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUDT6_HUMAN (Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1
Query:  313 DLHGGVTV-----DMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGV-GAFVMNNKREVLVVQEKHGALKGTGVWKLPTGTIEEGEDI 705
            D  GG++V     D    +D+  F             +G+  VW+ +PI  +  + PA   GF +HHAE D   L  W+ E    LP  ASH+VGV GA    + R++LVVQ+++   K   +WK P G  E  EDI
Sbjct:   51 DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRN---KLKNMWKFPGGLSEPEEDI 184          
BLAST of FC920447 vs. ExPASy Swiss-Prot
Match: NUDT6_MOUSE (Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus GN=Nudt6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 1
Query:  313 DLHGGVTVDMKKP-----MDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVKPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKREVLVVQEKHGALKGTGVWKLPTGTIEEGEDI 705
            D  GGV+V + +      +D+  F              G+   W+ +PI  ++ + PA   GF +HHA+P    L  W+ E    LP  A+H+VGV   V + + R+VLVVQ+++   K   +WK P G  E GEDI
Sbjct:   48 DRFGGVSVHLSRHHTLHGLDAAAFRRLLQAAIQQWRSDGRIAAWLHIPILQSHFIAPAASLGFCFHHAKPHSSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRN---KLKNMWKFPGGLSEPGEDI 181          
The following BLAST results are available for this feature:
BLAST of FC920447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NUDT2_ARATH3.246e-4251.81Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2... [more]
NUDT7_ARATH1.364e-4060.87Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7... [more]
NUD10_ARATH1.508e-3955.71Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT... [more]
NUDT8_ARATH7.248e-3449.36Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8... [more]
NUDT6_ARATH1.615e-3352.90Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6... [more]
NUDT5_ARATH3.597e-3341.81Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5... [more]
NUDT6_RAT1.285e-1433.58Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
NUDT6_HUMAN1.679e-1435.04Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
NUDT6_MOUSE4.884e-1433.58Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC32008E08EF RVDevelop1 Citrus clementina cDNA clone C32008E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920447 ID=FC920447; Name=FC920447; organism=Citrus clementina; type=EST; length=713bp
GATGTGCGTCAGAATTGAGCGTATTTGATTTTAGTTCGCGCCTAGAATTT
TTCAGAACCAACAAGTTAATTTAAATATACACTTTTGCCAGCTGAAGGCT
AGCTCCTTGGCGTCTTATATATTTTTTGCAGCCCCATTTGATTCCATTAT
CGACCAATAGGTCGCAGGCTAGAGTACAGAGGGTTCCAATATTAATAGAT
TGGAAACATGTCCAGCGATCCAATTTCAACGAATTTAATATCAGTTGAGG
AGGAGCAGAACATGATGCCTGAAGATGGCGTTCGGTGTCCAGAATTACTC
ACTGCTGTTGGTGATTTGCATGGTGGGGTTACAGTAGATATGAAAAAGCC
AATGGATTCTAAGGTCTTTTCTTCTAGGCTTAGAGCTTCATTATCGTTAT
GGAGGCAGCAGGGGAAGAGGGGTGTTTGGATTAAACTGCCTATTGAACTT
GCTAATCTTGTTAAACCTGCAGTTCAGGAAGGATTTCGGTACCACCATGC
TGAACCAGATTACTTGATGCTTGTCTATTGGATCCCGGAAACTGCTGATG
TTCTTCCTGCTAATGCTTCTCATCGCGTTGGTGTTGGTGCTTTTGTCATG
AACAATAAAAGAGAGGTTCTGGTTGTGCAGGAGAAACATGGAGCACTCAA
AGGTACCGGCGTCTGGAAGCTTCCCACCGGGACCATTGAGGAGGGTGAGG
ACATTTGTGCTGC
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