FC920472

Overview
NameFC920472
Unique NameFC920472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9397 contig Ccv1_Contig9397:23..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: PORA_CUCSA (Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.682e-92
Identity = 168/215 (78.14%), Postives = 185/215 (86.05%), Query Frame = 2
Query:   77 VPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            V  A S+PKEGK+S   KDSSLFG+SFS+H K++FSSS LRCKRE +Q+ G +RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETGKWH+IMACRDFLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF            S YPSKRLII
Sbjct:    9 VSPALSIPKEGKSSVCLKDSSLFGISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLII 223          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.586e-84
Identity = 160/216 (74.07%), Postives = 182/216 (84.26%), Query Frame = 2
Query:   77 VPSAFSVPKEGKTSASFKDSSLFGVS-FSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            +P++FS+PKEGK  AS KDS+LFGVS  S+  K DF+SSALRCK E  Q+ G VRA+T A A+PAV+ SS +GKKTLRKG+V+ITGASSGLGLATAKALAE+GKWH+IMACRD+LKA RAAKSAG+AKENYTIMHLDLASLDSVRQFVD FRRS  PLDVL+ NAAVY PTAKEP+FTA+GFE+SVGTNHLGHF          K SDYPSKRLII
Sbjct:    9 LPASFSIPKEGKIGASLKDSTLFGVSSLSDSLKGDFTSSALRCK-ELRQKVGAVRAETAAPATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAARAAKSAGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTADGFEISVGTNHLGHFLLSRLLLEDLKKSDYPSKRLII 223          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: PORA_ARATH (Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=2 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 6.622e-83
Identity = 161/221 (72.85%), Postives = 182/221 (82.35%), Query Frame = 2
Query:   77 VPSAFSVPKEGK----TSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNG--VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            V SAFSV K+GK     S+SFK+SSLFGVS SE +KADF SS+LRCKRE S RN   ++RAQ +AT++P+V  SS   KKTLRKG+V++TGASSGLGLATAKALAETGKWH+IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAAVY PTA +PTFTAEGFELSVG NHLGHF          K SDYPSKRLII
Sbjct:    9 VSSAFSVRKDGKLNASASSSFKESSLFGVSLSEQSKADFVSSSLRCKREQSLRNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLII 229          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.746e-81
Identity = 157/217 (72.35%), Postives = 181/217 (83.41%), Query Frame = 2
Query:   77 VPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQ--RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            +PS+FS+ KEGK + S K++SLFGV+FS+  + DFSS  LR +R   Q  + G +R+Q +AT +P+V+ ++ +GKKTLRKGSVIITGASSGLGLATAKALAETGKWH+IMACRDFLKAERAAKSAGM KENYTIMHLDLASLDSVRQFV+TFRRS RPLDVLVCNAAVY PTAKEPT+TA+GFELSVGTNHLGHF            SDYPSKRLII
Sbjct:    9 LPSSFSINKEGKANVSLKETSLFGVTFSDSLRTDFSS--LRTRRGCRQISQTGAIRSQAVAT-TPSVNRATGEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCNAAVYFPTAKEPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLII 222          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 295.049 bits (754), Expect = 2.604e-79
Identity = 155/218 (71.10%), Postives = 176/218 (80.73%), Query Frame = 2
Query:   77 VPSAFSVPKEGK---TSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            V SAFSV K+ K   +S+SFKDSSLFG S ++  K++  SS+LR KRE S RN  +RAQT AT+SP V   S  GKKTLRKG+V++TGASSGLGLATAKALAETGKW++IMACRDFLKAERAAKS GM K++YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAAVY PTAKEPT++AEGFELSV TNHLGHF          K SDYPSKRLII
Sbjct:    9 VSSAFSVRKDAKLNASSSSFKDSSLFGASITDQIKSEHGSSSLRFKREQSLRNLAIRAQTAATSSPTV-TKSVDGKKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSVGMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLII 225          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: PORC_ARATH (Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.971e-72
Identity = 137/218 (62.84%), Postives = 173/218 (79.36%), Query Frame = 2
Query:   77 VPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQR---NGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            +PS  S+ KEGK +AS K+++  G SFS H +A+  S+ L  K +  Q+   +  +RAQT+ TA+P  + +SP+ KKT RKG+ +ITGASSGLGLATAKALA+TGKWH+IMACR+FLKAE+AA+S GM+KE+YT+MHLDLASL+SV+QFV+ FRR+ +PLDVLVCNAAVY PTAKEP+FTAEGFE+SVGTNHLGHF          K SDYPSKR+II
Sbjct:   10 LPSTISIQKEGKFNASLKETTFTGSSFSNHLRAEKISTLLTIKEQRRQKPRFSTGIRAQTV-TATPPANEASPEQKKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRNFLKAEKAARSVGMSKEDYTVMHLDLASLESVKQFVENFRRTEQPLDVLVCNAAVYQPTAKEPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKRMII 226          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: PORB_HORVU (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.528e-66
Identity = 132/215 (61.40%), Postives = 158/215 (73.49%), Query Frame = 2
Query:   77 VPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            +PSA S  KEG      KDS+ FGV  ++  K D +S  LR KR  +  +  +RAQ  A ++P    +SP GKKT+R G+ IITGASSGLGLATAKALAE+GKWH+IMACRD+LK  RAA++AGM K +YTI+HLDLASLDSVRQFV   R+   P+DV+VCNAAVY PTAKEP+FTA+GFE+SVG NHLGHF          KASDYPSKRLII
Sbjct:   10 LPSALSARKEGAA----KDSAFFGVRLADGLKLDATSLGLRTKR-VNTSSVAIRAQAAAVSAPTATPASPAGKKTVRTGNAIITGASSGLGLATAKALAESGKWHVIMACRDYLKTARAARAAGMPKGSYTIVHLDLASLDSVRQFVKNVRQLDMPIDVVVCNAAVYQPTAKEPSFTADGFEMSVGVNHLGHFLLARELLEDLKASDYPSKRLII 219          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: PORB_ORYSJ (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.651e-65
Identity = 132/216 (61.11%), Postives = 159/216 (73.61%), Query Frame = 2
Query:   77 VPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQ-TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            +PSA S  KEG    + KDS+  GV   +  K + S+  LR KR  S  +  +RAQ + A +SP V  +SP GK+TLRKG+ +ITGASSGLGLATAKALAETG+WH++M CRDFLKA RAAK+AGM K +YTI+HLDLASLDSVRQFV   RR   P+DV+VCNAAVY PTAK+P+FTA+GFE+SVG NHLGHF           +SDYPSKRLII
Sbjct:   12 LPSALSARKEG----AVKDSAFLGVRLGDGLKLETSALGLRTKR-VSTSSVAIRAQASAAVSSPTVTPASPSGKQTLRKGTAVITGASSGLGLATAKALAETGRWHVVMGCRDFLKASRAAKAAGMEKGSYTIVHLDLASLDSVRQFVANVRRLEMPVDVVVCNAAVYQPTAKQPSFTADGFEMSVGVNHLGHFLLARELLADLTSSDYPSKRLII 222          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: PORA_ORYSJ (Protochlorophyllide reductase A, chloroplastic OS=Oryza sativa subsp. japonica GN=PORA PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.036e-64
Identity = 130/215 (60.47%), Postives = 148/215 (68.84%), Query Frame = 2
Query:   77 VPSAFSVPKEGKTSASFKDSSLFGVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            +PSA SVPK+G  SA  K+     VS     KA   S  +R           V       ASP    S   GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++MACRDFLKA  AAK+AGMA  +YT+MHLDLASLDSVRQFVD FRRSG PLD LVCNAA+Y PTA++PTFTA+G+E+SVG NHLGHF          K SDYPS+RLII
Sbjct:   10 LPSALSVPKKGNLSAVVKEPGFLSVS----QKAKKPSLVVRA----------VATPAAPVASPGAGTSKADGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKAATAAKAAGMAAGSYTVMHLDLASLDSVRQFVDNFRRSGMPLDALVCNAAIYRPTARQPTFTADGYEMSVGVNHLGHFLLARLMLDDLKKSDYPSRRLII 210          
BLAST of FC920472 vs. ExPASy Swiss-Prot
Match: PORA_HORVU (Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.174e-63
Identity = 130/218 (59.63%), Postives = 159/218 (72.94%), Query Frame = 2
Query:   77 VPSAFSVPKEGKT--SASFKDSSLF-GVSFSEHAKADFSSSALRCKREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKASDYPSKRLII 721
            +PS  SVPK+G +  + + KD++ F GVS    +KA  +S A+R +        V  A +  T SP    SSP GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++MACRDFLKA +AAK+AGMA  +YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAA+Y PTA+ PTFTA+G E+SVG NHLGHF          + SDYPS+R++I
Sbjct:    6 LPSTLSVPKKGSSMGAVAVKDTAAFLGVS----SKAKKASLAVRTQ--------VATAPSPVTTSPGSTASSPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRPTARTPTFTADGHEMSVGVNHLGHFLLARLLMEDLQKSDYPSRRMVI 211          
The following BLAST results are available for this feature:
BLAST of FC920472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PORA_CUCSA2.682e-9278.14Protochlorophyllide reductase, chloroplastic OS=Cu... [more]
POR_PEA4.586e-8474.07Protochlorophyllide reductase, chloroplastic OS=Pi... [more]
PORA_ARATH6.622e-8372.85Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_DAUCA4.746e-8172.35Protochlorophyllide reductase, chloroplastic OS=Da... [more]
PORB_ARATH2.604e-7971.10Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORC_ARATH8.971e-7262.84Protochlorophyllide reductase C, chloroplastic OS=... [more]
PORB_HORVU2.528e-6661.40Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORB_ORYSJ3.651e-6561.11Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_ORYSJ4.036e-6460.47Protochlorophyllide reductase A, chloroplastic OS=... [more]
PORA_HORVU1.174e-6359.63Protochlorophyllide reductase A, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008G12EF RVDevelop1 Citrus clementina cDNA clone C32008G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920472 ID=FC920472; Name=FC920472; organism=Citrus clementina; type=EST; length=722bp
TTGGTCAGAAAAAAAATCCTTTAGAAAGAAAGTCTCAACACTAAGCTAGT
TAATGGCCCTCCAAGCTGCTGCTTTGGTTCCCTCTGCTTTCTCAGTCCCC
AAAGAGGGCAAAACTAGTGCATCTTTCAAGGACTCAAGTCTTTTTGGAGT
TTCATTCTCAGAACATGCAAAGGCTGATTTCAGCTCTTCTGCATTAAGAT
GCAAGAGAGAATTCAGCCAAAGAAATGGGGTGGTAAGAGCCCAAACGATG
GCTACTGCCTCTCCAGCAGTCGATGTTTCTTCCCCACAAGGGAAGAAAAC
TCTCAGAAAAGGCAGCGTTATAATCACCGGCGCATCGTCTGGATTGGGGC
TGGCCACAGCTAAGGCTTTAGCTGAAACTGGGAAATGGCATATAATCATG
GCCTGCAGGGATTTTCTCAAGGCTGAAAGAGCCGCCAAGTCGGCTGGCAT
GGCTAAGGAGAACTACACTATCATGCATTTAGATCTGGCTTCCCTTGACA
GTGTTCGCCAATTTGTTGATACCTTCAGGCGATCAGGCAGACCTCTCGAT
GTGCTAGTTTGCAATGCTGCTGTTTATTTGCCAACTGCTAAGGAGCCTAC
ATTTACGGCTGAGGGATTTGAACTTAGTGTTGGAACCAACCATCTTGGTC
ACTTCCTCCTTTCACGGCTGTTGCTTGATGACTTGAAAGCATCTGATTAC
CCATCAAAGCGTCTCATCATCG
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