FC920511

Overview
NameFC920511
Unique NameFC920511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 101/180 (56.11%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  201 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGE-----CDPDDGTAGDG--GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP--NYPC-RGKYY 701
            GSA  CG      +CPGG CCS +GWCG T+D+C  GCQS C+    G+     CD  D   GDG  G L  II +  F+ LL++RND RCPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYC+ +E+      YCDP  NY C  GK Y
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINC--QPYCDPSSNYQCVAGKQY 197          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.231e-50
Identity = 95/174 (54.60%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  201 GSAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYY 701
            GSA  CG    G VCPGG CCS+FGWCG T D+C  GCQS C+                 G++G++I+R MF D+L++RN+  CP + FYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYC+ RE G+  + YC P+  +PC    KYY
Sbjct:   18 GSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSST---------------GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPCAAGRKYY 175          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.741e-48
Identity = 100/177 (56.50%), Postives = 118/177 (66.67%), Query Frame = 3
Query:  201 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCC--DGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GKYY 701
            GSA  CG    G +CPGG CCS+FGWCG T D+C   +GCQS C+           G+ GD G L  +I+RE F+ +L +RND  CPAR FYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYC+NRE+  A  DYC  DPNYPC  GK Y
Sbjct:   19 GSAEQCGRQAGGALCPGGLCCSQFGWCGNTDDYCKKENGCQSQCS-----------GSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPA--DYCQWDPNYPCAPGKQY 181          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.128e-47
Identity = 101/176 (57.39%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  201 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCC-DGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GKYY 701
            GSA  CG    G +CPGG CCS+FGWCG T D+C   GCQS C+           G A   G L  +ISRE F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y
Sbjct:   20 GSAEQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQY 184          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.288e-47
Identity = 94/167 (56.29%), Postives = 111/167 (66.47%), Query Frame = 3
Query:  204 SAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 686
            SA  CGS   G  CP G CCS+FGWCG T D+C  G CQS C     G   P   T   GG+LG IIS  MF+ +L++RND  C  + FY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC+ RE G +  DYC P+  +PC
Sbjct:   22 SAEQCGSQAGGARCPSGLCCSKFGWCGNTNDYCGPGNCQSQCP----GGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQG-SPGDYCTPSGQWPC 183          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.314e-47
Identity = 89/167 (53.29%), Postives = 107/167 (64.07%), Query Frame = 3
Query:  198 GGSAGN-CG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPC 686
            GGS G  CG    G +CPGG CCS+FGWCG T D+C  GCQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYCF RE   ++     P +PC
Sbjct:   23 GGSYGEQCGRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQCG-----------GPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPC 178          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.629e-46
Identity = 97/170 (57.06%), Postives = 111/170 (65.29%), Query Frame = 3
Query:  210 GNCGSGVVCPGGECCSRFGWCGLTIDHCC-DGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GKYY 701
            G    G +CPGG CCS+FGWCG T D+C   GCQS C+           G A   G L  +ISRE F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC  GK Y
Sbjct:    4 GRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPCAPGKQY 162          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.630e-46
Identity = 88/170 (51.76%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  204 SAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPC-RGKYY 701
            SA  CG+   G +CPGG CCS+FGWCG T ++C DGCQS C+           G++G GG L  +IS + F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC  GK Y
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQY 176          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.630e-46
Identity = 94/173 (54.34%), Postives = 112/173 (64.74%), Query Frame = 3
Query:  207 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECD-PDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYY 701
            A  CG+   G  CP   CCSR+GWCG T D C DGCQS C+   CG    P   +  DG  +G I+ R++FE LL +RND  CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF +E     SDYC P+  +PC    KYY
Sbjct:   32 AEQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSG--CGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQN-PPSDYCQPSPEWPCAPGRKYY 199          
BLAST of FC920511 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.630e-46
Identity = 91/174 (52.30%), Postives = 107/174 (61.49%), Query Frame = 3
Query:  207 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN--YPCRG--KYY 701
            A  CGS   G VCP   CCS+FGWCG T D+C  GCQS C+   CG   P   +   G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E  GAA  DYC  +  +PC    KYY
Sbjct:   21 AEQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYY 194          
The following BLAST results are available for this feature:
BLAST of FC920511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_POPTR2.197e-5156.11Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI9.231e-5054.60Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_THECC1.741e-4856.50Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_GOSHI1.128e-4757.39Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_TOBAC4.288e-4756.29Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_PHAVU7.314e-4753.29Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_GOSHI1.629e-4657.06Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_PEA3.630e-4651.76Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_ORYSJ3.630e-4654.34Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ3.630e-4652.30Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC32009D05EF RVDevelop1 Citrus clementina cDNA clone C32009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920511 ID=FC920511; Name=FC920511; organism=Citrus clementina; type=EST; length=703bp
CTCGCCGGGGCATGTCAATTTGTACAAAATAAATTTGTACAAGAGTTTGT
GGCTGTATCATTACTCATAAATATAACCCTCTAGCCAAAGCTGTGACATA
CACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAAATGAGGC
TTATTGCGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGA
GGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTG
TTGTAGTCGATTTGGTTGGTGTGGCCTAACAATAGACCACTGTTGTGACG
GCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGAC
GACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGA
GATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCA
GATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCA
GCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGC
CTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCAC
CTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCT
GCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTA
TGG
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