FC920547

Overview
NameFC920547
Unique NameFC920547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920547_ssr159 microsatellite FC920547_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920547_ssr32 microsatellite FC920547_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920547_ssr167 microsatellite FC920547_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9391 contig Ccv1_Contig9391:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.502e-79
Identity = 136/179 (75.98%), Postives = 156/179 (87.15%), Query Frame = 1
Query:  151 PPSEEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPS-NNPLEPVIHAFNTWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLVFTAPSGQEAWSYYRL 684
            P S   ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +Q YV YSP++ P+ NNPLEPVI  F+TWS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T+PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYYR+
Sbjct:   29 PSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRV 207          
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28
Identity = 73/194 (37.63%), Postives = 105/194 (54.12%), Query Frame = 1
Query:  133 STLTEAPPSEEEERKK---WGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLVFTAPSGQEAWSYYRL 684
            ST  +AP       KK   W   ++      S  PD QKAAS ++        +S  E S  D    + +E V      W       + K E++A N W +L+T PS ++AA G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYY++
Sbjct:   53 STPVKAPSRTSSGSKKSVHWSPELVSG----SQEPD-QKAASSSSAGSNPYIARSPAETS--DASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWSYYKV 238          
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 68/167 (40.72%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  205 PAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLVFTAPSGQEAWSYYRL 684
            P  P   P    A +  AE+        YV  SP  +   N ++ V      W       + KAE +A N W +LKTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYY++
Sbjct:   45 PPPPQPIPTGAAATTMPAESNP------YVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY-KEGEQTLWSYYKV 201          
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 58/167 (34.73%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  163 EEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKPSNNPLEPVIHAFNTW-------STKAETIARNIW-HNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLV 639
            + E   W   ++      S  PD +  +S +A        ++  E S  D      +E V      W       + KAE++A N W H L+       AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++A+CSD  LV
Sbjct:   24 DRENLHWNPELVSE----SPAPDEKALSSSSAARSNPYVARAPTETS--DASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSLV 177          
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 37/105 (35.24%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLVFTAPSGQEAWSYYRL 684
            K ++    +    K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+    +Y++
Sbjct:   56 KNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKV 160          
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPL-VFTAPSGQEAWSYYRL*YLW 696
            KAE +   +  +LK  PS+S+AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  + + ++  G    +YY++   W
Sbjct:   66 KAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEW 175          
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  409 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLVFTAPSGQEAWSYYRL 684
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G  +  +Y++
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKV 160          
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  409 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLVFTAPSGQEAWSYYRL 684
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G     +Y++
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKV 152          
BLAST of FC920547 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  370 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLVFTAPSGQEAWSYYRL 684
            K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +Y++
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKV 159          
The following BLAST results are available for this feature:
BLAST of FC920547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH5.502e-7975.98GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH7.541e-2837.63GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH4.138e-2640.72GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH1.091e-1834.73Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML8_ARATH5.070e-1635.24Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML2_ARATH5.070e-1639.09GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML6_ARATH8.648e-1640.22GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH1.927e-1540.22GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH5.605e-1535.24GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionC32009G09EF RVDevelop1 Citrus clementina cDNA clone C32009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920547 ID=FC920547; Name=FC920547; organism=Citrus clementina; type=EST; length=698bp
GGTGACCGTGAATAACAATAAATCCATCAGAATTTATTTATTTATTTATT
TTTGTTCTCATAGCAATAGCCTCAACCTTCCAGTCAATCGACAACCAGCA
TCACCATGACAAGCACACCAGAAAAATTGTCAAGCACTCTGACAGAAGCT
CCACCTTCAGAAGAAGAAGAAAGAAAGAAATGGGGTACCCATATCATGGG
AGCGCCAGCGGTGCCTAGTGCTCACCCAGACAATCAAAAGGCAGCCTCAT
GGAACGCCGAAAACCGCCAGCAAATCTATCATCAGTCTTATGTCGAGTAC
TCTCCTATCGACAAGCCAAGTAACAACCCTTTGGAGCCTGTAATTCACGC
GTTCAATACTTGGAGCACCAAAGCTGAGACCATTGCCCGCAACATCTGGC
ATAATCTGAAAACCGGTCCCTCTGTGTCGGAAGCTGCATGGGGGAAGGTG
AATTTGACAGCGAAAGCAATAACAGAGGGCGGATTTGAGTCTCTCTTCAA
GCAGATTTTTGCAACTGATCCGAATGAGAAGCTAAAGAAGACCTTTGCGT
GTTATCTTTCTACAACAACTGGTCCTGTTGCTGGAACACTCTATTTATCA
ACGGCCCGTGTGGCTTTTTGCAGTGATCGTCCCCTTGTGTTTACTGCTCC
ATCTGGGCAGGAAGCTTGGAGCTACTACAGGTTATGATACCTTTGGCG
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