FC920612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.707e-47 Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 3 Query: 330 ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656 E VEITYG+ +KLMHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G + KQGD +KSG IRLQHM+TRKWLHSHLHASPISGNLE+SCFG + SD Sbjct: 33 EGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSD 141
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_DICDI (Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.503e-27 Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 3 Query: 339 EITYGTVLKLMHEKTKFRLHSHEVPYGS---GSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656 ++TYG+++KL H T FRLHSH+V YGS GSGQQSVTGFP+ DD NS W++K G QG +K+G IIRL H T+K LHSHL SP++ E+SCFG E D Sbjct: 31 KVTYGSMVKLAHVPTNFRLHSHKVSYGSSGGGSGQQSVTGFPENDDTNSLWVIKGPHGNRVLQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGD 139
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24 Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 3 Query: 342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656 +T G+V+KL++ + RLHSH+V YGSGSGQQSVTG VDD+NSYW ++ ++G IK G IRL H+ T + LHSH SP+SGN E+S FG E E D Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGD 128
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24 Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 3 Query: 342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656 +T G+V+KL++ + RLHSH+V YGSGSGQQSVTG VDD+NSYW ++ ++G IK G IRL H+ T + LHSH SP+SGN E+S FG E E D Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGD 128
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24 Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 3 Query: 342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656 +T G+V+KL++ + RLHSH+V YGSGSGQQSVTG VDD+NSYW ++ ++G I+ G IRL H+ T + LHSH SP+SGN E+S FG E E D Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGD 128
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 1.901e-22 Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 3 Query: 342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656 +T G+VLKL++ K RLHSH++ YGSGSGQQSVTG + DDANSYW ++ +G ++ G +RL H+ T K LH+H SP+S N E+S FG + E D Sbjct: 36 VTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYWRIRGGSEGGCPRGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGD 140
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.235e-22 Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 3 Query: 342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656 +T G+VLKL++ + RLHSH++ YGSGSGQQSVTG DDANSYW ++ +G ++ G +RL H+ T K LH+H SP+S N E+S FG + E D Sbjct: 36 VTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGD 140
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 3 Query: 342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656 +T G+VLKL + + + RLHSH++ YGSGSGQQSVTG DDANSYW ++ +G ++ G +RL H+ T K LH+H SP++ N E+S FG + E D Sbjct: 36 VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGTEGECPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGD 140 The following BLAST results are available for this feature:
BLAST of FC920612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920612 ID=FC920612; Name=FC920612; organism=Citrus clementina; type=EST; length=658bpback to top |