FC920612

Overview
NameFC920612
Unique NameFC920612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11031 contig Ccv1_Contig11031:215..872. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.707e-47
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 3
Query:  330 ETVEITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656
            E VEITYG+ +KLMHEKTKFRLHSH+VPYGSGSGQQSVTGFP V D+NSYWIVKP+ G + KQGD +KSG  IRLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SD
Sbjct:   33 EGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSD 141          
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_DICDI (Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.503e-27
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 3
Query:  339 EITYGTVLKLMHEKTKFRLHSHEVPYGS---GSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656
            ++TYG+++KL H  T FRLHSH+V YGS   GSGQQSVTGFP+ DD NS W++K   G    QG  +K+G IIRL H  T+K LHSHL  SP++   E+SCFG   E D
Sbjct:   31 KVTYGSMVKLAHVPTNFRLHSHKVSYGSSGGGSGQQSVTGFPENDDTNSLWVIKGPHGNRVLQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGD 139          
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGD 128          
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.031e-24
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGD 128          
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656
            +T G+V+KL++ +   RLHSH+V YGSGSGQQSVTG   VDD+NSYW ++       ++G  I+ G  IRL H+ T + LHSH   SP+SGN E+S FG E E D
Sbjct:   24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGD 128          
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.901e-22
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656
            +T G+VLKL++   K RLHSH++ YGSGSGQQSVTG  + DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D
Sbjct:   36 VTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYWRIRGGSEGGCPRGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGD 140          
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.235e-22
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656
            +T G+VLKL++   + RLHSH++ YGSGSGQQSVTG    DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D
Sbjct:   36 VTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGD 140          
BLAST of FC920612 vs. ExPASy Swiss-Prot
Match: SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  342 ITYGTVLKLMHEKTKFRLHSHEVPYGSGSGQQSVTGFPDVDDANSYWIVKPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESD 656
            +T G+VLKL + + + RLHSH++ YGSGSGQQSVTG    DDANSYW ++        +G  ++ G  +RL H+ T K LH+H   SP++ N E+S FG + E D
Sbjct:   36 VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGTEGECPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGD 140          
The following BLAST results are available for this feature:
BLAST of FC920612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SDF2_ARATH1.707e-4778.90Stromal cell-derived factor 2-like protein OS=Arab... [more]
SDF2_DICDI1.503e-2755.05Stromal cell-derived factor 2-like protein OS=Dict... [more]
SDF2_MOUSE1.555e-2452.38Stromal cell-derived factor 2 OS=Mus musculus GN=S... [more]
SDF2_HUMAN2.031e-2452.38Stromal cell-derived factor 2 OS=Homo sapiens GN=S... [more]
SDF2_BOVIN3.464e-2451.43Stromal cell-derived factor 2 OS=Bos taurus GN=SDF... [more]
SDF2L_MOUSE1.901e-2248.57Stromal cell-derived factor 2-like protein 1 OS=Mu... [more]
SDF2L_HUMAN4.235e-2247.62Stromal cell-derived factor 2-like protein 1 OS=Ho... [more]
SDF2L_BOVIN7.223e-2246.67Stromal cell-derived factor 2-like protein 1 OS=Bo... [more]
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Properties
Property NameValue
Genbank descriptionC32010G03EF RVDevelop1 Citrus clementina cDNA clone C32010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920612 ID=FC920612; Name=FC920612; organism=Citrus clementina; type=EST; length=658bp
CCAAAACCAAAACTCACCAAAGGCTCTCTCCGTGAACTCTGGATAGATCC
CCCGATCGCACCGTGGCTTCGTCCGGGGCGCCGCCGACGACGCAATCCCT
CACTCAAAGAAGAAAACAAACATCATCAACCGAAAACGCTAACCGCAGTA
GAGATTCGATAAGAGGTTCGCGAGCGAGACCTCAAAACGACTTTCCTTTT
TGGCAACAGAACTGGTTCTTAGGTTTGCTCTTTTTCATGGCAATGGTATT
CTTCGCTCTCGCTGTCTTCCTCTTCCTCGGCCTCAATCTCGACGAATCTT
CTCCTTCCTCCGCCTCCGCCGCTTCCTCTGAAACTGTCGAGATTACTTAT
GGGACAGTTCTCAAGTTGATGCATGAGAAGACAAAATTCCGGCTGCATTC
ACATGAAGTGCCATATGGTTCTGGCAGCGGGCAGCAATCTGTTACGGGTT
TCCCTGATGTTGATGATGCCAATAGCTATTGGATTGTTAAGCCTATTCTA
GGGGCATCTGCCAAACAAGGCGACACCATAAAGAGTGGGACTATTATCCG
GTTGCAGCACATGAGAACTAGAAAATGGCTGCACAGCCATTTGCATGCGT
CCCCAATTTCAGGAAACCTTGAGATTAGCTGTTTCGGAGGCGAAGAGGAA
TCTGATAC
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