FC920640

Overview
NameFC920640
Unique NameFC920640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14173 contig Ccv1_Contig14173:1..488. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 7.451e-63
Identity = 119/148 (80.41%), Postives = 135/148 (91.22%), Query Frame = 1
Query:   46 MARS-ERDLLSTEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFIEV 486
            M RS E+DLLSTEIVNRGIE SGPNAGS TFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHA+YLATIPVL+LVFSAEVGSLSREE+W+KLW+   +DLA+V+GFFGVF  T  VYFMSRPRSVYL+DFACY+P D+ +VT+E+FIE+
Sbjct:    1 MGRSNEQDLLSTEIVNRGIEPSGPNAGSPTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHAVYLATIPVLVLVFSAEVGSLSREEIWKKLWD---YDLATVIGFFGVFVLTACVYFMSRPRSVYLIDFACYKPSDEHKVTKEEFIEL 145          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:  109 GPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFIE 483
            G   GS+   +R  R LPDFLQSVNLKYVKLGYHYLI++ + L   P L +V S E   ++ ++L ++LW   +++L S++    +  F L+VY M+RPR VYLVDF+CY PPD L+    +F+E
Sbjct:   13 GGGDGSVGVQIRQTRMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFP-LAVVISVEASQMNPDDL-KQLWIHLQYNLVSIIICSAILVFGLTVYVMTRPRPVYLVDFSCYLPPDHLKAPYARFME 135          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 53/112 (47.32%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  148 RRRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFIE 483
            RR+LP+FLQSVN+KYVKLGYHYLI H   L  +P L+ V   E+  L+ ++L++ +W   +++L + +    +  F  +VY MSRPRSVYLVD++CY PP+ LQV  ++F++
Sbjct:   22 RRKLPNFLQSVNMKYVKLGYHYLITHLFKLCLVP-LMAVLVTEISRLTTDDLYQ-IWLHLQYNLVAFIFLSALAIFGSTVYIMSRPRSVYLVDYSCYLPPESLQVKYQKFMD 131          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22
Identity = 51/111 (45.95%), Postives = 78/111 (70.27%), Query Frame = 1
Query:  151 RRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFIE 483
            R LPDF +SV LKYVKLGYHYLI H +YL   P L+LV +A++ + S  +L   LWE  +++L SV+    +  F +++YFM+RPR VYLV+F+C++P +  + T++ F++
Sbjct:   15 RNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSP-LVLVIAAQISTFSVTDL-RSLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMD 123          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.126e-18
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  157 LPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVL--GFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFIE 483
            +P+F  SV LKYVKLGY YL+NH +    IP++ +V + E+  +  EE+   +W   + DL  VL   FF +F  T  VYFMS+PR++YLVD++CY+PP   +V    F+E
Sbjct:    6 MPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIV-AVELLRMGPEEILN-VWNSLQFDLVQVLCSSFFVIFIST--VYFMSKPRTIYLVDYSCYKPPVTCRVPFATFME 112          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.471e-18
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  151 RRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLS-REELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFIE 483
            ++LP+FL SV LKYVKLGYHYLI++A+Y+  +PV LL  ++   SL+    L+  L +   H L+S L F  +  F  ++YF +RPR ++L+DFACY+P   L  TRE F++
Sbjct:   20 KKLPNFLLSVRLKYVKLGYHYLISNAVYILILPVGLLAATSSSFSLTDLTLLYNHLLK--FHFLSSTL-FAALLIFLTTLYFTTRPRRIFLLDFACYKPDSSLICTRETFMD 128          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  157 LPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFIE 483
            + DF  SV LKYVKLGY YLIN+ + L  IPV+  V + E+  +  EE+   L      +L  +L    +  F  +VYFMS+PR+VYLVD++CY+PP   +V    F+E
Sbjct:    1 MSDFSSSVKLKYVKLGYQYLINNFLTLLLIPVIATV-AIELLRMGPEEILSVL-NSLHFELLHILCSSFLIIFVSTVYFMSKPRTVYLVDYSCYKPPVTCRVPFSSFME 107          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  157 LPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFIE 483
            LP+FL SV LKYVKLGYHYLI++A+Y+  +P LL    A + S +  +L   L+   R    S      +     + YF +RPR V+L+DF+CY+P   L  TRE F++
Sbjct:   28 LPNFLLSVRLKYVKLGYHYLISNALYILLLP-LLAATIANLSSFTINDL-SLLYNTLRFHFLSATLATALLISLSTAYFTTRPRRVFLLDFSCYKPDPSLICTRETFMD 134          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  139 VRVRRRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSRE-ELWEKLWED--TRHDLASVLGFFGVFAFTLSVYFMSRPRSVYLVDFACYRPPDDLQVTREQFI 480
            +R+RRRLPD L SV LKYVKLG H   N    L  + +L L  +  V       + + +LW +   + D A+ L      +F L++Y  +R + VYLVDF+CY+P D+ +++ + F+
Sbjct:   28 IRIRRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFL 144          
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS15_ARATH (3-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana GN=KCS15 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 49/145 (33.79%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   73 STEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHA-IYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLSVYFMS------RPRSVYLVDFACYRPPDDLQVTREQFIEV 486
            +T++VN G++S  P               PDFL   NL+YVKLGY YL++ +  +   +P LLL+F                          V  F  + AF LS +F+        P SV+L+DF+CYRPPD L++T+  FIE+
Sbjct:    5 ATKMVNGGVKSKSPKGS------------PDFL-GYNLRYVKLGYIYLLSLSRTFCFFLPPLLLLF------------------------IFVSRFLPILAFPLSTFFILLIYHYLTPSSVFLLDFSCYRPPDHLKITKSDFIEL 112          
The following BLAST results are available for this feature:
BLAST of FC920640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
KCS10_ARATH7.451e-6380.413-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS4_ARATH1.623e-2547.203-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH3.060e-2447.323-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS11_ARATH2.193e-2245.953-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS6_ARATH1.126e-1844.143-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS17_ARATH1.471e-1845.543-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS5_ARATH5.232e-1643.123-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS19_ARATH6.834e-1642.203-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS1_ARATH1.861e-1336.753-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS15_ARATH4.584e-1233.793-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC32011B04EF RVDevelop1 Citrus clementina cDNA clone C32011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920640 ID=FC920640; Name=FC920640; organism=Citrus clementina; type=EST; length=488bp
GATTCTTATCAAAACTAGATAGCTATAACACATAACATTAACGTCATGGC
TAGAAGTGAACGAGACCTCCTGTCAACTGAAATTGTCAACCGTGGGATCG
AGTCCTCCGGTCCCAATGCCGGTTCTTTGACGTTCTCTGTGAGAGTCCGG
AGACGGCTGCCAGATTTTCTCCAGTCCGTGAACCTCAAGTACGTGAAGCT
AGGGTACCATTACCTCATCAACCATGCCATATATTTGGCCACCATTCCTG
TGTTGTTACTTGTGTTTAGTGCTGAAGTGGGGAGTCTCAGTAGAGAAGAG
CTCTGGGAGAAGCTCTGGGAAGATACCCGCCACGATCTCGCCTCCGTTCT
TGGCTTCTTCGGCGTGTTCGCCTTCACGCTCTCCGTTTACTTCATGTCAC
GCCCTCGCTCCGTTTATCTCGTTGATTTTGCTTGCTATCGCCCCCCCGAT
GATCTNCAGGTGACGAGAGAGCAGTTCATCGAAGTGGC
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