FC920688

Overview
NameFC920688
Unique NameFC920688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6308 contig Ccv1_Contig6308:679..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA3_PONAB (Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.460e-52
Identity = 101/218 (46.33%), Postives = 147/218 (67.43%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPD 655
            TPLGALS+++SA+L+ + LNE L   G +GC+L ++GST++V+HAP EE + S+ E+ +    P F+ +   V  ++LVLIL  AP+ GQTNIL+YI ICS+IG+ +V SVK +GIAIK  +E     K    ++   V +  V TQ+NYLN ALDTFNT++V+PIYY  FTS  +  SAI+F+++ G +A  I   L GF T++ G  +LH+ +  D
Sbjct:  144 TPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQEEEVTSLHEMEMKLRDPGFISFAVIVTVISLVLILIVAPKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTSIVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKNTD 361          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA2_PONAB (Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.902e-52
Identity = 99/216 (45.83%), Postives = 143/216 (66.20%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTRE 649
            TPLGALS++VSA+L+ + LNE+L   G +GCLL ++GST++V+HAP EE + ++ E+      P F+++   VV VAL+LI    PR+GQTNIL+YI ICSVIG+ +V  VK +GIAIK    G    +    WI  +  + CV TQ+NYLN ALD FNT++V+PIYY  FT+  +  SAI+FK++       +   L GF T++ G  +LH+ ++
Sbjct:   86 TPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKD 301          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA2_HUMAN (Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.902e-52
Identity = 99/216 (45.83%), Postives = 143/216 (66.20%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTRE 649
            TPLGALS++VSA+L+ + LNE+L   G +GCLL ++GST++V+HAP EE + ++ E+      P F+++   VV VAL+LI    PR+GQTNIL+YI ICSVIG+ +V  VK +GIAIK    G    +    WI  +  + CV TQ+NYLN ALD FNT++V+PIYY  FT+  +  SAI+FK++       +   L GF T++ G  +LH+ ++
Sbjct:   86 TPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKD 301          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA2_BOVIN (Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.902e-52
Identity = 99/216 (45.83%), Postives = 144/216 (66.67%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTRE 649
            TPLGALS++VSA+L+ + LNE+L   G +GCLL ++GST++V+HAP EE + ++ E+      P F+++   VV V+L+LI    PR+GQTNIL+YI ICSVIG+++V   K +GIAIK    G    +   TWI  +  + CV TQ+NYLN ALD FNT++V+PIYY  FT+  I  SAI+FK++       +   L GF T++ G  +LH+ ++
Sbjct:   86 TPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVSLILIFVVGPRHGQTNILVYITICSVIGAVSVSCAKGLGIAIKELFAGKPVLQHPLTWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVITCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKD 301          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA3_HUMAN (Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.708e-52
Identity = 100/218 (45.87%), Postives = 147/218 (67.43%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPD 655
            TPLGALS+++SA+L+ + LNE L   G +GC+L ++GST++V+HAP EE + S+ E+ +    P F+ +   +  ++LVLIL  AP+ GQTNIL+YI ICS+IG+ +V SVK +GIAIK  +E     K    ++   V +  V TQ+NYLN ALDTFNT++V+PIYY  FTS  +  SAI+F+++ G +A  I   L GF T++ G  +LH+ +  D
Sbjct:  144 TPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAPQEEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKNTD 361          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA2_MOUSE (Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.717e-51
Identity = 99/216 (45.83%), Postives = 142/216 (65.74%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTRE 649
            TPLGALS++VSA+L+ + LNE+L   G +GCLL ++GST++V+HAP EE + ++ E+      P F+++   VV VAL+ I    PR+GQTNIL+YI ICSVIG+ +V  VK +GIAIK  L G    +    WI     + CV TQ+NYLN ALD FNT++V+PIYY  FT+  +  SAI+FK++       +   L GF T++ G  +LH+ ++
Sbjct:   86 TPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATFVVIVALIFIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELLAGKPVLQHPLAWILLFSLVVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKD 301          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA3_MOUSE (Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 100/213 (46.95%), Postives = 144/213 (67.61%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHS 640
            TPLGALS+++SA+L+ + LNE+L   G +GC+L V+GST++V+HAP E  + S+ E+ +    P F+ +   +  ++LVLIL  AP+ GQTNIL+YI ICS+IG+ +V SVK +GIAIK  LE     K    +I   +    V TQ+NYLN ALDTFNT++V+PIYY  FTS  +  SAI+F+++ G  A  I   L GF T+++G  +LH+
Sbjct:  144 TPLGALSVLISAILSSYFLNERLNIHGKIGCILSVLGSTVMVIHAPQEGEVTSLHEMEMKLRDPGFVSFAVIISVISLVLILIVAPKKGQTNILVYIAICSLIGAFSVSSVKGLGIAIKELLERKPVYKDPLFFILLTMLALSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMKAGDIIGTLSGFFTIINGIFLLHA 356          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA4_HUMAN (Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 2.741e-49
Identity = 95/218 (43.58%), Postives = 145/218 (66.51%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPD 655
            TPLGALS+++SA+L+ + L E L  +G LGC++CV GST++V+HAP EE + ++ E+        F+++   ++   L+LI   APRYGQ NILIYI ICSVIG+ +V +VK +GI IK   +GL   +    +I +++    + TQ+N+LN ALD FNT++V PIYY  FT+  + +S I+FK++   SA  IA  L GF+T++ G  +LH+ ++ D
Sbjct:  194 TPLGALSVLISAILSSYFLRESLNLLGKLGCVICVAGSTVMVIHAPEEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRYGQRNILIYIIICSVIGAFSVAAVKGLGITIKNFFQGLPVVRHPLPYILSLILALSLSTQVNFLNRALDIFNTSLVFPIYYVFFTTVVVTSSIILFKEWYSMSAVDIAGTLSGFVTIILGVFMLHAFKDLD 411          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA4_MOUSE (Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.031e-48
Identity = 95/231 (41.13%), Postives = 149/231 (64.50%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDTPLITDLYTPLSP 694
            TPLGALS+++SA+ + + L E L  +G LGC++C+ GST++V+HAP EE + +V E+        F+++   +V   L+LI   APRYGQ NILIYI ICSVIGS +V +VK +G+ I+   +GL   +    +I +++    +I Q+N+LN ALD FNT++V PIYY  FT+  + +S ++FK++   SA  I   L GF+T++ G  +LH+ ++ D   I+  +T  +P
Sbjct:  134 TPLGALSVLISAIFSSYCLGESLNLLGKLGCVICMAGSTVMVIHAPKEEKVTTVAEMASKMKDTGFIVFAVLLVVSCLILIFIVAPRYGQRNILIYIIICSVIGSFSVTAVKGLGVTIRNFFQGLPVVRHPLPYILSLILGLSIIIQVNFLNRALDIFNTSLVFPIYYVFFTTVVVASSIVLFKEWYTMSAVDIVGTLSGFVTIILGVFMLHAFKDLDINQISLPHTHKNP 364          
BLAST of FC920688 vs. ExPASy Swiss-Prot
Match: NIPA1_MOUSE (Magnesium transporter NIPA1 OS=Mus musculus GN=Nipa1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 83/219 (37.90%), Postives = 132/219 (60.27%), Query Frame = 2
Query:    2 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLE---GLNQAKCIETWIFAMVALTCVITQLNYLNMALDTFNTAVVSPIYYAMFTSFTIFASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTRE 649
            TPLGAL +   ++LA ++L EKL  +G LGCLL   GS ++++H+P  ES+ +  E+    T P F+ Y+  V+ + L+LI + AP +G TNI++YI ICS++GS TV S K IG+A +  L       +A C+   + A++  + +I Q  Y+N AL+ F+++V   IYY +FT+  + ASAI+F+++S           CGF TV  G  ++   +E
Sbjct:   90 TPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCS-IIVQFRYINKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKE 307          
The following BLAST results are available for this feature:
BLAST of FC920688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
NIPA3_PONAB3.460e-5246.33Magnesium transporter NIPA3 OS=Pongo abelii GN=NIP... [more]
NIPA2_PONAB5.902e-5245.83Magnesium transporter NIPA2 OS=Pongo abelii GN=NIP... [more]
NIPA2_HUMAN5.902e-5245.83Magnesium transporter NIPA2 OS=Homo sapiens GN=NIP... [more]
NIPA2_BOVIN5.902e-5245.83Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2... [more]
NIPA3_HUMAN7.708e-5245.87Magnesium transporter NIPA3 OS=Homo sapiens GN=NIP... [more]
NIPA2_MOUSE1.717e-5145.83Magnesium transporter NIPA2 OS=Mus musculus GN=Nip... [more]
NIPA3_MOUSE2.480e-5046.95Magnesium transporter NIPA3 OS=Mus musculus GN=Nip... [more]
NIPA4_HUMAN2.741e-4943.58Magnesium transporter NIPA4 OS=Homo sapiens GN=NIP... [more]
NIPA4_MOUSE3.031e-4841.13Magnesium transporter NIPA4 OS=Mus musculus GN=Nip... [more]
NIPA1_MOUSE2.844e-3837.90Magnesium transporter NIPA1 OS=Mus musculus GN=Nip... [more]

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Properties
Property NameValue
Genbank descriptionC32011G07EF RVDevelop1 Citrus clementina cDNA clone C32011G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920688 ID=FC920688; Name=FC920688; organism=Citrus clementina; type=EST; length=713bp
GACTCCACTTGGTGCATTGAGTATCATCGTTAGTGCTGTTTTGGCACATT
TCATGTTGAATGAGAAATTACAGAAAATGGGAATGTTGGGTTGTCTTTTA
TGCGTAGTGGGCTCTACAATGATTGTGCTTCATGCTCCTCTAGAGGAGTC
TCTTAATTCGGTTCAAGAAATCTGGGTGTTAGCGACGCAACCCGCATTTC
TTTTGTATGTGGGCTCAGTGGTAGCCGTGGCACTAGTGTTGATATTGTAT
TGTGCTCCTCGATATGGCCAAACCAACATATTGATCTATATAGGAATTTG
CTCTGTGATTGGCTCATTGACAGTTATGAGTGTAAAAGCCATTGGCATTG
CAATAAAGCTGACACTAGAGGGCTTGAACCAAGCCAAGTGCATTGAGACA
TGGATTTTTGCGATGGTTGCACTTACCTGTGTTATCACTCAATTAAATTA
TCTAAACATGGCATTGGATACTTTCAACACAGCAGTTGTTTCTCCTATCT
ATTATGCCATGTTCACATCTTTTACTATTTTTGCCAGTGCAATAATGTTT
AAGGATTATTCTGGTCAAAGTGCAAGCAGCATAGCGTCAGAGCTCTGTGG
TTTTATCACCGTTTTATCTGGAACTTCTGTTTTGCACAGCACAAGAGAGC
CAGATACACCCTTGATTACAGATCTCTATACCCCGTTATCTCCCAAGTAT
CATGGTACATTCA
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