FC920703

Overview
NameFC920703
Unique NameFC920703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15198 contig Ccv1_Contig15198:447..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.028e-98
Identity = 175/225 (77.78%), Postives = 194/225 (86.22%), Query Frame = 2
Query:    8 ELFPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            E+  FEALREGL+EEMDRDP V VMGEDVGHYGGSYKVTKG A+KYGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGMNMGFLLLAFNQI+NN GMLHYTSG  FT             QLGAEHSQRLESYFQS+PG+Q+VACSTP NAKGL+K++IRSENPVILFEHVLLYNLKE IPD EY+  LE+AE+VRPG  +TILTYSRMR+HV+QA K+LV KG
Sbjct:    3 EMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLKETIPDNEYLVCLEKAEIVRPGTDITILTYSRMRHHVLQATKSLVYKG 227          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 3.488e-97
Identity = 172/225 (76.44%), Postives = 196/225 (87.11%), Query Frame = 2
Query:    8 ELFPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            E+  FEALR+GL+EEMDRDP V VMGEDVGHYGGSYKVTKG A++YGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGMNMGFLLLAFNQI+NN GMLHYTSGG FT             QLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+ILFEHVLLYNLKE + +EEY+  LE+AE+VRPG  +TILTYSRMR++V+QA K+LV KG
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLKEDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKG 227          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.265e-95
Identity = 165/221 (74.66%), Postives = 191/221 (86.43%), Query Frame = 2
Query:   20 FEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            +EAL EG+ EE++RDP V V+GED+GHYGGSYKVTKGL +KYG+LR+LDTPIAENSFTG+ IGAAMTGLRPI+EGMNMGFLLLAFNQI+NN GMLHYTSGG FT             QLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+I FEHVLLYN+KE IP +EY+  LE+AE+VR G  +TILTYSRMRYHV+QAAKTL+ KG
Sbjct:    7 YEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIKENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKG 227          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.273e-95
Identity = 169/225 (75.11%), Postives = 190/225 (84.44%), Query Frame = 2
Query:    8 ELFPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            E+  FEALR+ L+EEM RDP V VMGEDVGHYGGSYKVTKG  +KYGDLR+LDTPIAENSFTGM IGAAMTGLRPIVEGMNMGFLLLAFNQI+NN GMLHYTSGG F              QLGAEHSQRLESYFQS+PG+QMVACSTPYN KGL+K+AIR++NPVI FEHVLLYNL E + ++EY+  LE+AE+VRPG  +TILTYSRMR+HV+QAAK LVNKG
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKG 227          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 1.424e-88
Identity = 158/225 (70.22%), Postives = 181/225 (80.44%), Query Frame = 2
Query:    8 ELFPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            ++F F+ALR   +EEM +DP VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG FT             QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP EEY   L + E VR G+ +TILTYSRMR+HV+QA   L+ +G
Sbjct:    3 KIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEG 227          

HSP 2 Score: 24.6386 bits (52), Expect = 1.424e-88
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  673 KQGYDPEVID 702
            K+GYDPEVID
Sbjct:  225 KEGYDPEVID 234          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.611e-88
Identity = 157/225 (69.78%), Postives = 185/225 (82.22%), Query Frame = 2
Query:    8 ELFPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            ++F F+ALR   +EEM++D  VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG FT             QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP++EY+  L++AE+VR G+ +TILTYSRMR+HV +A   L+N G
Sbjct:    3 KVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDG 227          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.125e-87
Identity = 156/227 (68.72%), Postives = 185/227 (81.50%), Query Frame = 2
Query:    5 HELFPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGM 685
            H+LF +EALRE ++EEM RD  V V+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAAMTGL+P+VEGMN+ FLLLAFNQISNN GMLHYTSGG ++             QL AEHSQR+E+YFQ++PG+++VACSTPYNAKGL+KAAIR  NPV+  EHVLLYNLK+ IP +EY+  L++A++VR G  VTI+TYSRM +HVMQA K LV +GM
Sbjct:    3 HKLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIPLVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGM 229          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.770e-86
Identity = 158/225 (70.22%), Postives = 179/225 (79.56%), Query Frame = 2
Query:    8 ELFPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            E+  F+ALRE  +EEM  D  V ++GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSF GM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG F              QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPVI FEHVLLYNLK+ +P++EY   L++AE+VR G  VTILTYSRMR+HVMQA   LVN G
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIPIVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDG 227          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.504e-81
Identity = 151/224 (67.41%), Postives = 174/224 (77.68%), Query Frame = 2
Query:   11 LFPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            +F +EALR  ++EEM +D +V ++GEDVGHYGGSYKVTK L  KYGDLRVLD PIAENSFTGM IGAAMTGLRPIVEGMNMGF+LLAFNQISNN  ML YTSGG F              QL AEHSQRLES FQSIPG+Q+VACST YNAKGL+K+AI  + P++  EHVLLYNLK  +PDEEY   L++AE+VR G  VTI+TYSRMRYHV+ A + LV  G
Sbjct:    4 MFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNIPVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLEHVLLYNLKGFVPDEEYYLPLDKAEVVRSGSDVTIVTYSRMRYHVLAAVEKLVLNG 227          
BLAST of FC920703 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.097e-79
Identity = 145/223 (65.02%), Postives = 173/223 (77.58%), Query Frame = 2
Query:   14 FPFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKG 682
            F FEAL   ++EEM R+  V ++GED+GHYGGSYKVT+ L  KYG+ RV+DTPIAENSF G  IGAAMTGL  +VEGMNMGF+LLAF+QISNN GML  TSGG +              QLGAEHSQRLE YFQS+PG+Q+VACSTPYNAKGL+K+AIRS+NP+   EHVLLYNLK  +PD +Y+  LE+AE+VR G  +TILTYSRMRY+V+QA K LV KG
Sbjct:    5 FLFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIPIVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLKAEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKG 227          

HSP 2 Score: 22.3274 bits (46), Expect = 1.097e-79
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  673 KQGYDPEVID 702
            ++GYDPE+ID
Sbjct:  225 EKGYDPEIID 234          
The following BLAST results are available for this feature:
BLAST of FC920703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAPU7.028e-9877.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR3.488e-9776.44Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU3.265e-9574.66Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL7.273e-9575.11Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.424e-8870.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU8.611e-8869.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME1.125e-8768.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL2.770e-8670.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA3.504e-8167.41Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI1.097e-7965.02Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC32012A02EF RVDevelop1 Citrus clementina cDNA clone C32012A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920703 ID=FC920703; Name=FC920703; organism=Citrus clementina; type=EST; length=703bp
AGGGCACGAACTTTTTCCTTTTGAAGCTCTACGAGAAGGCTTGGAAGAAG
AAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGTCAC
TATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGGGGA
TCTCAGGGTTCTTGATACCCCTATTGCTGAGAACTCTTTCACTGGTATGG
GCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATGAAC
ATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAACAACTGTGGTAT
GCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAGTTATCCGTG
GACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCCCAACGCCTT
GAGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGCATGCTCGAC
CCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGAGAACC
CAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCAAGGAAAGGATT
CCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAGATGGTTAGGCC
TGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAGGTATCATGTGA
TGCAAGCTGCTAAAACTTTGGTAAACAAGGGTATGATCCTGAGGTTATTG
ACA
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