FC920836

Overview
NameFC920836
Unique NameFC920836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC4_ARATH (NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 3
Query:   96 VGFRFHPTDEEII-LLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKY-KTEVIGTKKILSFSRDDAAAEKDKTEWVIHEI-AVEDSPDYKKDFVVCRLERKREKKTLGVVST 569
            VGFRF P DEEI+   L  K  D     V   I  +D+ SFEPW+LP  S I+S + VWYFF     KY +  +  RRT  G+WKKTG+   + RK    E IG K++L F   D +    KT+WV+HE  A    P+    + VC++E K E+  +   ST
Sbjct:    5 VGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDGS----KTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSST 162          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 64/175 (36.57%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   84 MDSLVGFRFHPTDEEII-LLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKY-KTEVIGTKKILSFSRDDAAAEKDKTEWVIHEI-AVEDSPDYKKDFVVCRLERKREKKTLGVVSTKRKRETKTL 596
            M + VGFRF PTD EI+ + L  K  +     V   I  +D+ SF+PW+LP HS +++ ++VWYFF     KY K  R  R+TK G+WKKTG   +I RK    E IG K++L F     +    K++W +HE  A   SP+    + +C+++ K E++   V +    + T +L
Sbjct:    1 MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGGS----KSDWAMHEYHATFSSPNQIMTYTLCKVKFKGERREFSVATGSGIKHTHSL 171          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC9_ARATH (Putative NAC domain-containing protein 9 OS=Arabidopsis thaliana GN=NAC009 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.183e-22
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 3
Query:   72 NQKLMDSLV-GFRFHPTDEEIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAV----EDSPDYKKDF----------VVCRLERKREKKTLGVVS 566
            +QK+ D L+ GFRFHPTDEE++     ++      S+  I+++D+Y ++PW+LP  +   + E+ WYF+C    KY  S R +R T  G+WK TG    I      + IG KK L F +   AA+  KT+W++HE  +    E SP  K+ F           +CR+ +K    TL  +S
Sbjct:    9 DQKMEDVLLPGFRFHPTDEELVSFYLKRKVQHNPLSIELIRQLDIYKYDPWDLPKFA--MTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYK-GRAAKGVKTDWMMHEFRLPSLSEPSPPSKRFFDSPVSPNDSWAICRIFKKTNTTTLRALS 185          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC74_ORYSJ (NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 3
Query:   99 GFRFHPTDEEIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVED-----SPDYKKDFVVCRLERKRE 542
            GF FHP D E+I     K+          I E+D+Y  EPW+LP   D+ +++  W+FF     KY    R +R T  GYWK TG+   IK   +T  IGTKK L F        + +TEW++HE  +++      PD K  +V+CR+ ++ +
Sbjct:   12 GFGFHPKDTELISHYLKKKIHGQKIEYEIIPEVDIYKHEPWDLPAKCDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAIKMGKQT--IGTKKTLVFHEGRPPTGR-RTEWIMHEYYIDERECQACPDMKDAYVLCRITKRND 161          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC98_ARATH (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 60/163 (36.81%), Postives = 86/163 (52.76%), Query Frame = 3
Query:   99 GFRFHPTDEEIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVEDSPDY-------KKDFVVCRLERKREKKTLGVVS 566
            GFRFHPTDEE+I    +++     FS R I E+DL   EPW+LP  + +  +E  WYFF     KY    R +R T+ GYWK TG+   I       ++G KK L F +   A + +K+ WV+HE  +E    Y       K ++V+ R+ +K    + G VS
Sbjct:   20 GFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKE--WYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYK-GRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLASTGAVS 179          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC54_ARATH (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 65/178 (36.52%), Postives = 93/178 (52.25%), Query Frame = 3
Query:   99 GFRFHPTDEEIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVEDSPDY-------KKDFVVCRLERKREKKTLGVVSTKRKRETKTLGVVST 611
            GFRFHPTDEE+I    +K+   + FS   I ++DL   EPWELP  + +  +E  WYFF     KY    R +R T+ GYWK TG+   IK      ++G KK L F +   A + +K+ WV+HE  ++    Y       K ++V+C++  K      GVVS    RET  +   S+
Sbjct:   23 GFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKE--WYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYK-GRAPKGEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKS-----GVVS----RETNLISSSSS 188          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC7_ARATH (NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.806e-21
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 3
Query:   99 GFRFHPTDEEIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPWHSDIQSEEEV-WYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAV---EDSPDYKKDFVVCRLERKR 539
            GFRFHPTDEE++     K+       +  IK+IDLY  EPW+L     I  EE+  WYFF     KY    R +R TK G+WK TGR   I  ++   +IG +K L F +   A    K++W++HE  +   E+    ++ +VVCR+ +KR
Sbjct:   10 GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRH--SLIGMRKTLVFYK-GRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKR 157          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 55/152 (36.18%), Postives = 83/152 (54.61%), Query Frame = 3
Query:   99 GFRFHPTDEEIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVEDSPDYKK------DFVVCRLERK 536
            GFRFHPTDEE++     ++     F    I   D+Y  EPW+LP  S ++S +  WYFF     KY+   + +R T++GYWK TG+   I+    + V+G KK L + +   A   ++T WV+HE  + D  D KK       +V+CR+ +K
Sbjct:   12 GFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRN--GSRVVGMKKTLVYHK-GRAPRGERTNWVMHEYRLSDE-DLKKAGVPQEAYVLCRIFQK 159          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC31_ARATH (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 58/160 (36.25%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   99 GFRFHPTDEEIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVEDSPDY----KKDFVVCRLERKR-EKKTLGVV 563
            GFRFHPTDEE+I      +    G S   I E+DL   EPWELP  + +   E  WYF+     KY    R +R T  GYWK TG+   +      +++G KK L F +   A    KT+WV+HE  +E+   +    K+++V+CR+  K  ++K +G++
Sbjct:   25 GFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMGERE--WYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYK-GRAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKTGDRKNVGLI 181          
BLAST of FC920836 vs. ExPASy Swiss-Prot
Match: NAC77_ORYSJ (NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 61/171 (35.67%), Postives = 87/171 (50.88%), Query Frame = 3
Query:   99 GFRFHPTDEEIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPWHSDIQSEEEVWYFFCEPYYKYTKSKRVHRRTKEGYWKKTGRGSNIKRK--------------YKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVEDS-----PDY----KKDFVVCRLERKRE 542
            GFRFHPTD E+IL   +++     F+   I E+DL   EPW+LP  S  +  E+ WYFF     KY    R +R TKEGYWK TG+   I R+               K +++G KK L F     A +  KT WV+HE  +  +     P+     K ++VVC++  K++
Sbjct:   22 GFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLP--SKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTLVFYM-GRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFHKKQ 189          
The following BLAST results are available for this feature:
BLAST of FC920836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NAC4_ARATH8.193e-2440.74NAC domain-containing protein 4 OS=Arabidopsis tha... [more]
NAC5_ARATH4.066e-2336.57NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC9_ARATH1.183e-2235.00Putative NAC domain-containing protein 9 OS=Arabid... [more]
NAC74_ORYSJ7.668e-2235.29NAC domain-containing protein 74 OS=Oryza sativa s... [more]
NAC98_ARATH1.308e-2136.81Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thal... [more]
NAC54_ARATH1.708e-2136.52Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thal... [more]
NAC7_ARATH3.806e-2138.41NAC domain-containing protein 7 OS=Arabidopsis tha... [more]
NAC78_ARATH4.970e-2136.18NAC domain-containing protein 78 OS=Arabidopsis th... [more]
NAC31_ARATH1.446e-2036.25Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thal... [more]
NAC77_ORYSJ7.177e-2035.67NAC domain-containing protein 77 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC32013F05EF RVDevelop1 Citrus clementina cDNA clone C32013F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920836 ID=FC920836; Name=FC920836; organism=Citrus clementina; type=EST; length=681bp
GGCAGACCAAATTGGATAGTATAAGCTCTTACTCTCTCATTCTTGTTCTA
CGTTTCTCCTGCCGTGTGTTGAATCAGAAATTAATGGACAGTCTCGTGGG
GTTCAGATTCCACCCAACTGATGAAGAAATTATTCTTCTCCTGACGATGA
AGAGACGTGACCCTGCAGGTTTCTCCGTCCGTACGATCAAGGAAATCGAT
CTCTACAGCTTTGAGCCCTGGGAGCTACCCTGGCATTCTGACATTCAGTC
TGAGGAAGAAGTGTGGTACTTTTTCTGTGAGCCTTATTATAAGTATACCA
AGAGTAAACGGGTACATAGAAGAACAAAGGAAGGCTACTGGAAAAAGACT
GGCAGAGGTTCTAACATCAAGCGCAAATACAAAACTGAGGTGATTGGTAC
GAAGAAGATTTTGTCTTTTTCCCGCGATGATGCTGCTGCCGAGAAAGATA
AGACTGAGTGGGTTATACACGAGATAGCTGTTGAAGATAGCCCTGATTAT
AAGAAGGACTTTGTTGTGTGTCGCCTTGAAAGAAAACGGGAGAAGAAAAC
GCTTGGTGTTGTTTCCACTAAGAGAAAACGGGAGACGAAGACGCTTGGTG
TTGTTTCTACTAAGAGAAAACGGGACAAGAAGCTTGGTGTTTCCACCAGC
GATGGTGATCAATCTTTGTCAAAATTGACTT
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