FC920846

Overview
NameFC920846
Unique NameFC920846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4005 contig Ccv1_Contig4005:28..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920846 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 3.584e-76
Identity = 141/183 (77.05%), Postives = 157/183 (85.79%), Query Frame = 1
Query:  112 NLAFFSSTAKSLRALKTT----RGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 648
            N+ F SS++KSLR+L  T       GS+L A+M S +A+K P  LDFETSVFKK+ +SLA  +E+IVRGGRDLFK LPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGL
Sbjct:   36 NIGFLSSSSKSLRSLTATVAGNGATGSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGL 218          

HSP 2 Score: 36.5798 bits (83), Expect = 3.584e-76
Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  641 LDFSHGFLLGHLQSMGLDF 697
            L  SHGFLLGHLQS GLDF
Sbjct:  216 LGLSHGFLLGHLQSSGLDF 234          
BLAST of FC920846 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.554e-71
Identity = 135/191 (70.68%), Postives = 155/191 (81.15%), Query Frame = 1
Query:  109 LNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASETALKTPFL--LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 648
            LNL F   SST K+ R+LK  R       G GSAL AQM S  ++ TP     DF++SVFKK+ ++L+  DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSILGL
Sbjct:   34 LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGL 224          

HSP 2 Score: 35.4242 bits (80), Expect = 5.554e-71
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  641 LDFSHGFLLGHLQSMGLDF 697
            L  SHGFLLGHLQS+G DF
Sbjct:  222 LGLSHGFLLGHLQSLGQDF 240          
BLAST of FC920846 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.733e-70
Identity = 133/184 (72.28%), Postives = 149/184 (80.98%), Query Frame = 1
Query:   97 AFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 648
            +F   NL+F   + +S+RA ++    GSALGA   S      P  LDFETSVFKK+ ++LA  +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQADNYEKIFS +KPNSILGL
Sbjct:   26 SFAPTNLSFSKLSPQSIRARRSITV-GSALGATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQADNYEKIFSHLKPNSILGL 208          

HSP 2 Score: 37.3502 bits (85), Expect = 2.733e-70
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  641 LDFSHGFLLGHLQSMGLDF 697
            L  SHGFLLGHLQS+GLDF
Sbjct:  206 LGLSHGFLLGHLQSIGLDF 224          
BLAST of FC920846 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 2.965e-66
Identity = 125/167 (74.85%), Postives = 139/167 (83.23%), Query Frame = 1
Query:  148 RALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 648
            RA+        A+GA M S         LDF+TSVF K+ +SLA  +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSILGL
Sbjct:   49 RAVTAMVAAPPAVGAAMPS---------LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGL 206          

HSP 2 Score: 36.5798 bits (83), Expect = 2.965e-66
Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  641 LDFSHGFLLGHLQSMGLDF 697
            L  SHGFLLGHLQS GLDF
Sbjct:  204 LGLSHGFLLGHLQSAGLDF 222          
The following BLAST results are available for this feature:
BLAST of FC920846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILV5_ARATH3.584e-7677.05Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL5.554e-7170.68Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_PEA2.733e-7072.28Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ORYSJ2.965e-6674.85Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionC32013G04EF RVDevelop1 Citrus clementina cDNA clone C32013G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920846 ID=FC920846; Name=FC920846; organism=Citrus clementina; type=EST; length=698bp
GGAGTCAAAAAAAACAAAATGGTCGCGGGTACTTTACCATCTAGTCCGTC
GATCCCCAAATTTAGTCCATCGCCGTCGTCCGAAACCCTAAAAGGAGCAT
TCAAGCATCTCAATCTAGCGTTTTTCTCATCCACCGCGAAGTCCTTGAGA
GCTCTCAAAACTACCAGAGGCAGGGGCTCAGCTCTCGGCGCTCAGATGGC
GTCCGAGACAGCTCTCAAGACACCTTTCTTGCTGGATTTTGAGACATCCG
TCTTTAAGAAGGACGCGATATCACTGGCTAACCGCGATGAGTTCATTGTG
AGAGGAGGAAGGGATTTGTTTAAGTTGCTGCCGGACGCATTCAACGGGAT
TAACCAGATTGGGGTGATTGGCTGGGGTTCCCAGGGACCTGCCCAAGCTC
AGAATTTGAGGGATTCCCTTGCTGAAGCTAAATCTGATATTGTTGTCAAG
GTTGGGCTTAGGAAGGGCTCTCGTTCTTTTGCTGAAGCTCGTGCTGCTGG
TTTTACTGAAGAGAATGGAACTTTGGGGGATATATATGAAACTATTTCAG
GCAGTGATCTTGTGTTATTGTTGATTTCTGATGCTGCTCAGGCAGATAAT
TATGAGAAGATATTCTCTTGCATGAAACCAAACAGCATCCTTGGACTTTT
CCCATGGGTTTCTTCTTGGGCATTTGCAGTCAATGGGACTTGATTTCC
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