FC920869

Overview
NameFC920869
Unique NameFC920869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:15..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 4.211e-35
Identity = 71/127 (55.91%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVN-----RPASDY 453
            GG   + G     G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT  ETTGGWPDAP G YAWGYCY++++N      P+S+Y
Sbjct:   63 GGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNY 189          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.225e-34
Identity = 74/158 (46.84%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   49 SLLIFSLALSFVLGGSAQNCGSGV----------------------VCGERDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            +L+ F L LS +L GSA+ CG                          CG       +  G++G++I+R +F D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT  ETTGGW  AP G YAWGYCY+R+   P + YC
Sbjct:    5 ALVAFCL-LSLILVGSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YC 160          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.018e-33
Identity = 77/162 (47.53%), Postives = 94/162 (58.02%), Query Frame = 1
Query:   55 LIFSLALSFVLGGSAQNCG---------SGVVCGERDTGHGTDG-------------------GELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            LIFS  LSF L   A+ CG         +G+ C E      T+                    G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT  ETTGGW  AP G Y+WGYC+ +Q   P+S+YC
Sbjct:    9 LIFSFLLSFSL---AEQCGRQAGGALCPNGLCCSEFGWCGDTEAYCKQPGCQSQCGGTPPGPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPSSNYC 166          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 6.723e-33
Identity = 78/164 (47.56%), Postives = 95/164 (57.93%), Query Frame = 1
Query:   55 LIFSLALSFVLGGSAQNCG---------SGVVCGE------------------RDTGHGTDGG---ELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            LIFSL LS     SA+ CG         +G+ C E                  + T  GT  G   +L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT  ETTGGW  AP G Y+WGYC+ +Q   PASDYC
Sbjct:   22 LIFSLLLSL---SSAEQCGRQAGGALCPNGLCCSEFGWCGNTEPYCKQPGCQSQCTPGGTPPGPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPASDYC 181          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.723e-33
Identity = 79/166 (47.59%), Postives = 100/166 (60.24%), Query Frame = 1
Query:   49 SLLIFSLALSFVLGGSAQNCG---SGVVC------------GERD-------------TGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTG--GWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            +L +FSL LS+++ GSA+ CG    G +C            G  D             +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT  ETTG  GW  AP G Y WGYCY R++N   +DYC
Sbjct:    5 ALSVFSLFLSYLILGSAEQCGRQAGGALCPGGLCCSQFGWCGNTDDYCKKENGCQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN--PADYC 167          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.147e-32
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHGTD--GGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G +   CG G  C  +  G  T   GG+LG IIS  +F+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYC 170          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.498e-32
Identity = 66/123 (53.66%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G +   CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC
Sbjct:   52 GSTTDYCGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSTYC 170          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.337e-32
Identity = 69/133 (51.88%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHG----------TDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G ++  CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT  ETTGGWP AP G ++WGYC+ +Q   P SDYC
Sbjct:   57 GTTSDFCGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCF-KQEQNPPSDYC 184          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:  157 GGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            GG+LG IIS  +F+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYC 175          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 79/172 (45.93%), Postives = 97/172 (56.40%), Query Frame = 1
Query:   34 MRLIGSLLIFSLALSFVLGGSAQNCG---------SGVVCGE--------------------RDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTG--GWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            M  + +L IF L L +V+ GSA+ CG          G+ C +                      +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT  ETTG  GW  AP G YAWGYCY R++N P S YC
Sbjct:    1 MSFLQALSIFLLLLLYVVVGSAEQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCSGSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELN-PPSSYC 170          
The following BLAST results are available for this feature:
BLAST of FC920869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHI6_POPTR4.211e-3555.91Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIB_VITVI1.225e-3446.84Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_BRANA3.018e-3347.53Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH6.723e-3347.56Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_THECC6.723e-3347.59Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_TOBAC1.147e-3254.40Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIT_PHAVU1.498e-3253.66Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_ORYSJ3.337e-3251.88Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_TOBAC4.358e-3261.00Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_GOSHI4.358e-3245.93Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32014B01EF RVDevelop1 Citrus clementina cDNA clone C32014B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920869 ID=FC920869; Name=FC920869; organism=Citrus clementina; type=EST; length=457bp
AAAGGATAATTGTCTCATAACTCAAACTTTCAAATGAGGCTCATTGGGTC
CTTACTAATTTTCTCTCTAGCTTTATCTTTTGTACTAGGAGGTTCAGCAC
AGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGG
ACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGGTGTTTGAAGA
CTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACA
CTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAAC
TCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCA
AACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAAT
ATGCTTGGGGATATTGCTATATTAGGCAAGTTAACCGCCCTGCGTCCGAC
TACTGTT
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