FC920875

Overview
NameFC920875
Unique NameFC920875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:678..1368. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.327e-88
Identity = 156/229 (68.12%), Postives = 184/229 (80.35%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            K RQFK +ELIASENF  RAVMEALGSH TNKY++GYPG+RYY G + +D++E LC +RALKAF LD   WGVNVQPYS + ANFAVYT LL P DRIMGLD PSGGHL+HGY     KK+SA+SIFFES PY++    G IDY++LEE A+ ++PK++I G S+YPREWDY R R IA+K GA LMCDMAH SGL+AA+ L SPFDYCD+VTSTTHK+LRGP  GIIF
Sbjct:   25 KDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQT-DKKKISASSIFFESMPYQIGAD-GLIDYQRLEENALLFKPKLIISGASAYPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIF 251          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.498e-86
Identity = 150/229 (65.50%), Postives = 186/229 (81.22%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            KQRQF  +ELIASENF  RAVME++GS  TNKY++G PGARYY GN+ +DQ+ENLC +RAL+ F+L+ + WGVNVQPYS ++ANFA +TGLL P DRIMGLD PSGGHL+HGY     KK+SA SIFFES PY+VN +TGY+DY K+E  A  +RPK+LI G S+YPREWDY R R+IA+K GA L+CDMAHISG++A K+  SPF +CD+VT+TTHK+LRGP  G+IF
Sbjct:   49 KQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQT-DKKKISATSIFFESMPYQVN-ETGYVDYNKMEANAALFRPKLLIAGASAYPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIF 275          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.205e-78
Identity = 145/229 (63.32%), Postives = 176/229 (76.86%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            K+RQ + +ELIASENF  +AVM+ALGS + NKYS+GYPGARYY GN++IDQ+E LC +RAL+ F LD   WGVNVQP S + ANFAVYT ++    RIMGLD P GGHL+HG+  P  +KVSA S FF+S PYKV+P TG IDY+KLE+ AM +RPK +I G S Y R  DY RFR+IA K GA LM DMAHISGL+AA  + SPF+Y D+VT+TTHKSLRGP G +IF
Sbjct:   67 KKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTP-ARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIF 294          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.580e-78
Identity = 139/229 (60.70%), Postives = 176/229 (76.86%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            K RQ+K +ELI SENF   +VM+A+GS +TNKYS+GYPGARYY GN+YID  E LC +RAL+AF LD + WGVNVQP S + ANF VYT LL P +RIM LD P GGHLSHGY     KK+SA SIFFE+ PY+++  TGYIDY+++E+ A  +RPK+++ G S+Y R +DY R R++ NK  AV++ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP G +IF
Sbjct:   70 KARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIF 297          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 290.812 bits (743), Expect = 4.580e-78
Identity = 146/229 (63.76%), Postives = 175/229 (76.42%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            K RQ + +ELIASENF  +AVM+ALGS + NKYS+GYPGARYY GN++IDQ+E LC +RAL+ F LD   WGVNVQ  S + ANFAVYT L+    RIMGLD P GGHL+HG+  P  +KVSA S FF+S PYKV+ Q+G IDY+KLEE AM +RPK+LI G S Y R  DY RFR+IA K GA LM DMAHISGL+AA  + SPF+Y D+VT+TTHKSLRGP G +IF
Sbjct:   71 KSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMGLDLPDGGHLTHGFFTP-ARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIF 298          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.020e-77
Identity = 140/229 (61.14%), Postives = 175/229 (76.42%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            K RQ+K +ELI SENF   +VM+A+GS +TNKYS+GYPGARYY GN+YID  E LC +RAL+AF LD   WGVNVQP S + ANF VYT LL P +RIM LD P GGHLSHGY     KK+SA SIFFE+ PY+++  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ NK  A+L+ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP G +IF
Sbjct:   71 KARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIF 298          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.332e-77
Identity = 140/229 (61.14%), Postives = 175/229 (76.42%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            K RQ+K +ELI SENF   +VM+A+GS +TNKYS+GYPGARYY GN+YID  E LC +RAL+AF LD+  WGVNVQP S + ANF VYT LL   DRIM LD P GGHLSHGY     KK+SA SIFFE+ PY++N  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ +K  A+L+ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP G +IF
Sbjct:   71 KARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIF 298          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.332e-77
Identity = 140/229 (61.14%), Postives = 175/229 (76.42%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            K RQ+K +ELI SENF   +VM+A+GS +TNKYS+GYPGARYY GN+YID  E LC +RAL+AF LD   WGVNVQP S + +NF VYT LL P DRIM LD P GGHLSHGY     KK+SA SIFFE+ PY+++  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ +K  AVL+ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP G +IF
Sbjct:   71 KARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIF 298          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.877e-77
Identity = 139/229 (60.70%), Postives = 174/229 (75.98%), Query Frame = 2
Query:    5 KQRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            K RQ+K +ELI SENF   +VM+A+GS +TNKYS+GYPGARYY GN+YID  E LC +RAL+AF LD   WGVNVQP S + ANF VYT LL   DRIM LD P GGHLSHGY     KK+SA SIFFE+ PY++N  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ +K  A+++ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP G +IF
Sbjct:   71 KARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIF 298          
BLAST of FC920875 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 1.924e-76
Identity = 141/228 (61.84%), Postives = 176/228 (77.19%), Query Frame = 2
Query:    8 QRQFKSIELIASENFVCRAVMEALGSHLTNKYSKGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHAPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIANKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGP*GGIIF 691
            +RQ  SI+LIASENF   +V +ALG+ L+NKYS+GYPGARYY GN++ID++E LC +RALKAF +  D WGVNVQ  S + AN  VY  ++ P +R+MGL  P GGHLSHGY A   +K+SA S +FESFPY+VNP+TG IDY+ LE+ A+ YRPK+L+ G S+Y R  DY R R+IA+KCGA LM DMAHISGLIAA  + SPF+Y DIVT+TTHKSLRGP G +IF
Sbjct:   33 ERQKHSIDLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYGGNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLYLPDGGHLSHGY-ATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAGTSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIF 259          
The following BLAST results are available for this feature:
BLAST of FC920875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC1_DICDI8.327e-8868.12Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC2_DICDI3.498e-8665.50Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC_CAEEL1.205e-7863.32Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_ARATH4.580e-7860.70Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEBR4.580e-7863.76Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_SOLTU1.020e-7761.14Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR1.332e-7761.14Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_PEA1.332e-7761.14Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR3.877e-7760.70Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC_YEAST1.924e-7661.84Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC32014B07EF RVDevelop1 Citrus clementina cDNA clone C32014B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920875 ID=FC920875; Name=FC920875; organism=Citrus clementina; type=EST; length=691bp
GGGGAAACAACGCCAATTCAAGTCAATCGAGTTAATAGCTTCAGAGAATT
TCGTTTGTCGTGCTGTAATGGAGGCTCTTGGCAGCCATTTAACAAACAAG
TACTCAAAAGGATACCCTGGAGCTAGATATTATACAGGCAATCAGTACAT
AGATCAGATAGAAAATCTATGTTTTGAACGAGCGTTAAAAGCTTTTGATC
TTGATAGCGATAATTGGGGAGTCAACGTTCAGCCATATTCATGTACCTCT
GCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTAT
GGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATGCAC
CAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCCT
TATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGGA
GAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCAT
ATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAAATAAGTGT
GGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTGC
TAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACAA
CTCACAAAAGTTTACGAGGTCCCTAGGGAGGGATCATTTTC
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