FC920883

Overview
NameFC920883
Unique NameFC920883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14208 contig Ccv1_Contig14208:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920883 vs. ExPASy Swiss-Prot
Match: TGD1_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.332e-21
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 3 
Query:  411 PARHTRLFVIPNTGDGHPSVSMMEENKIT-NHAPGSEAESFLSKWSPPQYLWRGLSVPVLAGPV 599
            P R  RL+V  N  DGHPS+SM+EE   T N+AP  EAE   SKWSP +Y+WRGLSVP++AG V
Sbjct:   49 PIRQRRLYVNLNANDGHPSMSMLEEETSTENNAPSQEAELPFSKWSPSKYIWRGLSVPIIAGQV 112

HSP 2 Score: 44.2838 bits (103), Expect = 1.332e-21
Identity = 19/22 (86.36%), Postives = 19/22 (86.36%), Query Frame = 2 
Query:  614 KGKIHWRNTLQQLERVGPDLLG 679
            KGKIHWRNTLQQLER GP  LG
Sbjct:  118 KGKIHWRNTLQQLERTGPKSLG 139
The following BLAST results are available for this feature:
BLAST of FC920883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TGD1_ARATH1.332e-2159.38Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC32014C05EF RVDevelop1 Citrus clementina cDNA clone C32014C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920883 ID=FC920883; Name=FC920883; organism=Citrus clementina; type=EST; length=687bp
CAGTAGTTGAATCATCCCATTCCATACTTACGCCGCAACAACCACTTCAC
TTTCACTGAGTTCGCACGTCGCCGATCACCCATCTCGTCCTGTCTTTCTC
TCACTTTCTTGGAGGGTAAAGTAAATCAATGAATGAAATTTAAGAGTTAC
ATTTGGTCCGTAGCTGCTGTGTTGCAACCGCCATTACAATTGGCGTGTAA
TTGGATGTCTGCAGTTATTCTTTCAGTTAGAGCGACGCCTTCATCGTAAC
TTAAGTTGAAAATATGCAGACCATTTCACATATTCATTCTATCTCTCACT
TCTTGAACAGAAGGAGCTGTTCAAAACCCAATGGATTTGTCAAAACGAAA
ATCTCTAGTTCAAGTTCATTTAGCTTCACTGCTAGAGTTCCTACTTGTAA
ATTTCTAGTTCCTGCTCGACATACCAGATTGTTTGTGATACCCAACACAG
GTGACGGCCACCCATCTGTCTCCATGATGGAAGAAAACAAAATTACAAAC
CATGCACCCGGTTCTGAAGCAGAGTCCTTTTTGAGCAAATGGTCGCCTCC
TCAGTATCTTTGGAGGGGATTATCAGTTCCTGTCTTGGCGGGTCCAGTAA
TTATTAGGATTATAAAGGGAAAATACATTGGAGGAACACTCTCCAACAGC
TGGAGAGAGTTGGACCAGATCTGTTGGGGTTTGTCTT
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