FC920892

Overview
NameFC920892
Unique NameFC920892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig597 contig Ccv1_Contig597:379..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920892 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.229e-59
Identity = 127/223 (56.95%), Postives = 148/223 (66.37%), Query Frame = 3
Query:   18 KMLGYETVR----SKDDGKFEVDLEGGDGER-LYPGLSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGIKAMVFCG-SSFTTRQLDQRF 668
            K  GY +V      +  GK ++DLE G GE  LYPGLSYGENQLRWGFIRKVYGIL+AQ++LTTL+S++ VL  P+ND                       H+YHQKHPVNLI+L LFTVSLS  V VSCA T+GRIVL+ALILT +VV SLT YTFWA+KKGKDFSFLGP              +QMFFPLG TS AVYGG  A+VFCG   + T  L +RF
Sbjct:    3 KPYGYASVSMSGIDRSAGK-DIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRF 224          
BLAST of FC920892 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 48/167 (28.74%), Postives = 77/167 (46.11%), Query Frame = 3
Query:  132 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGIKAMVFCG 632
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          ++   HP+NL +L  FT+S SL VA      D  +VL+A I+T+AV   LT YT    +  +DF+  G               +++FF    T   V   + A++FCG
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTL---QSKRDFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCG 192          
The following BLAST results are available for this feature:
BLAST of FC920892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BI1L_ARATH2.229e-5956.95BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE1.198e-1228.74Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionC32014D07EF RVDevelop1 Citrus clementina cDNA clone C32014D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920892 ID=FC920892; Name=FC920892; organism=Citrus clementina; type=EST; length=708bp
AAATCAAAATCGCTTGAAAGATGTTGGGCTACGAGACGGTGAGGAGCAAA
GATGACGGCAAATTCGAGGTAGATCTGGAAGGCGGAGATGGGGAGAGGCT
TTACCCCGGTCTCAGCTACGGCGAGAACCAGCTCCGATGGGGTTTCATTC
GCAAGGTGTACGGCATCTTGACGGCCCAGATCGTTTTGACCACCTTGGTC
TCCTCAATCACCGTTCTTTACAATCCCATCAACGATCTTCTCAGGGGCAA
TTCTGGCCTTCTCCTCTTCCTCTCCATCCTCCCCTTCATCCTGTTATGGC
CACTGCATGTGTATCATCAGAAGCACCCTGTGAACTTGATTGTCCTTGGT
CTGTTCACTGTATCTCTGAGTCTTCCTGTTGCTGTAAGCTGCGCTAATAC
CGATGGTAGGATTGTGCTTGAAGCATTAATTCTGACCTCGGCTGTGGTTT
GTTCTTTAACTGGGTACACTTTCTGGGCCTCTAAGAAGGGCAAAGACTTC
AGCTTTCTTGGACCAATTCTATTCACCAGCCTCATAATCCTCATTCTGAC
TAGCTTTATGCAGATGTTCTTTCCTCTGGGATCTACATCCACTGCTGTTT
ATGGTGGAATTAAGGCAATGGTCTTCTGTGGATCATCGTTTACGACACGA
CAACTTGATCAGCGCTTCCATATGATGATTATATCTTGGCTCTGTCACTC
TCTATCTG
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