FC920909

Overview
NameFC920909
Unique NameFC920909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14457 contig Ccv1_Contig14457:26..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 91/197 (46.19%), Postives = 131/197 (66.50%), Query Frame = 3
Query:  117 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVDPFTSVA 707
            M   P  +SD+GK+A+DLL +DY   HKFT++  S+TG+ ++A+GLKK E+F+ D+++  K+ N T DVKVDT SNV T +T+ +  P  K   SF +PD KSGK++LQYLH +A I++SIGL  +PL+  S   G+  + LG ++ FDTA+ +F K  AG+  +  D  A+L L DKG  + ASY H V P T+ A
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTA 197          
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.295e-46
Identity = 86/197 (43.65%), Postives = 128/197 (64.97%), Query Frame = 3
Query:  117 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVDPFTSVA 707
            MG  P  ++++GK+A+DLL KDY   HKF+++  S TG+ ++++G KK ++F+ D+N+  K+ N T D+KVDT SN+ T +T+ +  P  K  LSFR+PD +SGKL++QYLH +A I +S+GL   P++  S  +G+  + LG +V FDT +  F K  AG+     D  A+L L +KG  L ASY H V P TS A
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTA 197          
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 85/197 (43.15%), Postives = 126/197 (63.96%), Query Frame = 3
Query:  117 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVDPFTSVA 707
            M   P  ++D+GK+A+DLL KDY    KFT+S  S TG+ ++++G KK E+F+GD+N+  K+ N T D+KVDT SN+ T +T+ +  P  KA LSF++P+  SGK++LQYLH +A I SS+GL   P++  S+ IG+  L  G ++ FDT      K  A +   K D   +L L +KG  L ASY HA++P ++ A
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTA 197          
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.233e-42
Identity = 82/187 (43.85%), Postives = 124/187 (66.31%), Query Frame = 3
Query:  129 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVD 689
            P  + ++GK+A+DLL +DY   HKFTL+  +S G+ ++AT  KK ++  G+I S  K+ N TVDVK ++ SNV T VT+ ++ P  K+ LSF +PD +SGK +LQY H +A + +SIGL  +P++ LS+  G+K L +G +V  DTA+ +  KY AG+  +  D  A+L L +KG +L ASY H V+
Sbjct:    4 PGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVN 190          
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41
Identity = 85/188 (45.21%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  129 PAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDIL-PSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVD 689
            P  +S +GK+AKDLL +DY   HKFTL+  ++ G  ++AT  KK ++ +G+I S  K+ N TVDVK ++ SNV T +T  D+  P  K  LSF +PD KSGK++LQYLH +A I++SIGL   P++ LS   G+  L +G +V  DTA+ +F KY A +     D  A+L L +KG +L ASY H V+
Sbjct:    4 PGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVE 191          
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.741e-40
Identity = 78/196 (39.80%), Postives = 121/196 (61.73%), Query Frame = 3
Query:  117 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVDPFTSV 704
            M   P  ++++GK+A+DLL +DY    KF+++  SSTG+ ++ TG  K  +F+GD+ +  K+ N T DVKV T S++ T +T  +  P  K  +  ++PDHKSGK ++QY H +A I +S+G   TP++  S  +G+  L LG +V ++T S +F  + AG    K D +A+L+L DKG+ L ASY   V P T V
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVV 196          
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 8.241e-38
Identity = 77/197 (39.09%), Postives = 118/197 (59.90%), Query Frame = 3
Query:  117 MGSNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVDPFTSVA 707
            M   P  ++++GK+A+DLL KD++   KF+++  S  G+ +++TG KK ++ +GD+    +  N T D+KV T S      T+ +  P  ++  SF++PD  SGK++LQYLH +A I +S+GL   P +  S  IGS  L +G +V FDT S +F K  AG+   K D  A+L + DKG  L ASY H V+P  + A
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTA 197          
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.076e-37
Identity = 76/191 (39.79%), Postives = 121/191 (63.35%), Query Frame = 3
Query:  138 FSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDI-LPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVDPFTSVA 707
            ++D+GK+ +DLL KDY+   KF L+  S  G+ ++A G +K+E   G++++  K+   TVDVK ++ S++ T +T+ +   P  K+ ++  +PD +SGKL+ QYLH +A +++S+GLN  P++ LS   GSK L +G +V FDTA++ F KY A + L  PD  A+L L + G  L ASY H V   +  A
Sbjct:    8 YTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTA 198          
BLAST of FC920909 vs. ExPASy Swiss-Prot
Match: VDAC_NEUCR (Mitochondrial outer membrane protein porin OS=Neurospora crassa GN=B7H23.070 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 55/193 (28.50%), Postives = 85/193 (44.04%), Query Frame = 3
Query:  138 FSDVGKRAKDLLNKDYDFGHKFTLSVPSST--GLGLSATGLKK-DEIFIGDINSVY--KSGNTTVDVKVDTYSNVSTKVTMVDILPS---TKAALSFRIPDHKSG-KLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALXASYIHAVD 689
            FSD+ K A DLLNKD+      T+ V S+T   +    TG    D++  G +   +  K    TV    +T + + TKV M D L      +   SF    +  G K +L +   +    +   L   P   + A +G +  + G   G+D   A+   Y+A +G + P +SAA+   D      ASY H V+
Sbjct:    6 FSDIAKSANDLLNKDFYHLAAGTIEVKSNTPNNVAFKVTGKSTHDKVTSGALEGKFTDKPNGLTVTQTWNTANALETKVEMADNLAKGLKAEGIFSFLPATNARGAKFNLHFKQSNFHGRAFFDLLKGPTANIDAIVGHEGFLAGASAGYDVQKAAITGYSAAVGYHAPTYSAAITATDNLSVFSASYYHKVN 198          
The following BLAST results are available for this feature:
BLAST of FC920909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VDAC2_SOLTU5.694e-4746.19Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU6.295e-4643.65Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA6.960e-4543.15Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ORYSJ3.233e-4243.85Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT3.574e-4145.21Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC2_ARATH6.741e-4039.80Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ARATH8.241e-3839.09Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC_MAIZE1.076e-3739.79Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC_NEUCR1.325e-1128.50Mitochondrial outer membrane protein porin OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionC32014F09EF RVDevelop1 Citrus clementina cDNA clone C32014F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920909 ID=FC920909; Name=FC920909; organism=Citrus clementina; type=EST; length=708bp
AAAAATACACTGCCTCTGCAAAATATCTTTTTCTCGCAAGCAAGCTGTCG
CCTGAAGCGGTCCGAACAGCCGCTTTTCTCCATTATTACAGTGTATTTTA
TCGTTTCTGAGAAGAGATGGGGAGCAATCCGGCACCGTTTTCCGATGTTG
GCAAGAGAGCCAAAGACCTCTTGAACAAAGATTACGATTTTGGGCACAAG
TTTACTCTCTCGGTGCCAAGCTCCACTGGCCTGGGACTTTCAGCAACAGG
TCTGAAGAAGGATGAAATTTTTATTGGTGACATAAATAGTGTGTACAAGA
GTGGAAATACTACTGTGGATGTGAAAGTTGATACTTATTCTAATGTATCT
ACAAAAGTAACTATGGTTGATATCTTGCCATCTACCAAAGCAGCTCTGAG
CTTCAGAATACCAGATCACAAGTCTGGCAAGTTGGATCTCCAGTACCTTC
ATCCCCATGCTGCCATTGATTCCAGTATTGGCCTTAATCCAACCCCACTT
TTGGAGCTATCAGCAACAATTGGAAGTAAAGAGCTTGTTTTAGGTGGTGA
AGTCGGATTTGATACAGCTTCTGCTTCATTCATTAAGTACACTGCTGGGA
TTGGCTTGAACAAGCCAGATTTCTCTGCTGCCCTCTTACTGGCGGATAAG
GGACAGGCACTCANGGCATCATACATTCATGCTGTGGATCCATTCACTTC
AGTTGCCG
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