FC920981

Overview
NameFC920981
Unique NameFC920981
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:1403..1781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920981 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.336e-26
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 NEKAVEMFIDEKIGYLDIFKVVELTCDKHRADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA 201
            NEKAVEMFIDEKI YLDIFKVVELTCDKHR +LVTSPSLE+I+HYD WAREYAA +Q SSG  PV A
Sbjct:  411 NEKAVEMFIDEKISYLDIFKVVELTCDKHRNELVTSPSLEEIVHYDLWAREYAANVQLSSGARPVHA 477
[Close]
BLAST of FC920981 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.422e-25
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 NEKAVEMFIDEKIGYLDIFKVVELTCDKHRADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVP 198
            NEKAVE+FIDEKIGYLDIFKVVELTCD HR +LVT PSLE+IIHYD WAREYAA LQ S+G SPVP
Sbjct:  407 NEKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIHYDLWAREYAASLQPSTGLSPVP 472
[Close]
BLAST of FC920981 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.965e-23
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 NEKAVEMFIDEKIGYLDIFKVVELTCDKHRADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSP 192
            NEKAVEMFIDEKIGYLDIFKVVELTCDKHR+++  SPSLE+I+HYD WAR+YAA +  S+G SP
Sbjct:  404 NEKAVEMFIDEKIGYLDIFKVVELTCDKHRSEMAVSPSLEEIVHYDQWARDYAATVLKSAGLSP 467
The following BLAST results are available for this feature:
BLAST of FC920981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DXR_ARATH8.336e-2682.091-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ1.422e-2583.331-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI2.965e-2376.561-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32201F05EF RVDevelopN Citrus clementina cDNA clone C32201F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920981 ID=FC920981; Name=FC920981; organism=Citrus clementina; type=EST; length=379bp
AACGAGAAAGCAGTAGAGATGTTCATTGATGAAAAGATTGGCTATCTGGA
TATTTTCAAGGTTGTGGAGCTAACGTGTGATAAGCACAGGGCGGACTTGG
TAACCTCGCCTTCCCTAGAGGATATAATACATTATGATGCATGGGCACGA
GAGTATGCAGCTGGTTTGCAATTTTCATCTGGTAGAAGCCCTGTTCCAGC
ATGACTGCTTGCATTGATGCCCTACTTTGAGAACTAGAGAGGTGTTTACT
TTTTGCCAAAAACTGGTATTCTCGTCAATGTTTAAAGAGGCATTGAGCAA
TTGTACCATAAATAAATATAAGGTGGGGATTCAGTATGTGTCCCCGATTT
TATAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top