FC921042

Overview
NameFC921042
Unique NameFC921042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length299
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig871 contig Ccv1_Contig871:554..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.329e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 3
Query:    3 TNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            TNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:  108 TNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.866e-15
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3
Query:    3 TNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:  108 SNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.049e-15
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:  109 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.049e-15
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:  109 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.594e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:  109 NSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.469e-14
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVAC
Sbjct:  109 NSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.469e-14
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVAC
Sbjct:  109 NSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:  109 HSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.506e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3
Query:    9 SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:  111 SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 146          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.506e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3
Query:    9 SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC
Sbjct:  110 SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 145          
The following BLAST results are available for this feature:
BLAST of FC921042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
SODC_PEA1.329e-15100.00Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_ANACO3.866e-1597.37Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC1_ORYSJ5.049e-15100.00Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI5.049e-15100.00Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_CARPA6.594e-1597.30Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC5_MAIZE1.469e-1497.30Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC4_MAIZE1.469e-1497.30Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC2_ORYSJ1.919e-1497.30Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC_SOLCS2.506e-14100.00Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_NICPL2.506e-14100.00Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]

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Properties
Property NameValue
Genbank descriptionC32202D06EF RVDevelopN Citrus clementina cDNA clone C32202D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921042 ID=FC921042; Name=FC921042; organism=Citrus clementina; type=EST; length=299bp
GAACAAATTCTATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGAT
GATCTTGGCAAGGGTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGG
TGGCAGAGTAGCTTGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCT
CTTTGGACCATAATAAATTCATTTGATATGATGTGTTGAATGCATTCTGG
TCCATACATGCTTGAGTGTGACTTTTTGAGACTATGATCTTGAATAAGAG
AAATCTAAAACTTTGTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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