FC921047

Overview
NameFC921047
Unique NameFC921047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig56 contig Ccv1_Contig56:45..554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921047 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.500e-11
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:   76 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTAGICR 363
            ++AK P+AT  +R  L VV  + S    ++ +    K++SS+  RR+L+F                E EEPKRGT  AKKKYA VCVTMPTA ICR
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
The following BLAST results are available for this feature:
BLAST of FC921047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PST2_ARATH1.500e-1143.75Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC32202D12EF RVDevelopN Citrus clementina cDNA clone C32202D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921047 ID=FC921047; Name=FC921047; organism=Citrus clementina; type=EST; length=510bp
GAGAAATCACTTGCATCCAAGTCAGCAGCAAACATGGCTTCGATGACCAT
GGCAGCAGCCTCATTACTGCCCACAAGCATGGCCAAAAACCCAGCAGCAA
CAAGAGCGAAGAGAGGAGGCCTCATCGTTGTGGCCAAGGCTGCATCATCA
AAAGCTGAAAATGTGAGCATGGAATTCAAGAACAAGGATGAGAGCAGCAG
CAACGGAAGAAGGGAGCTTGTGTTTGCAGCAGCAGCTGCAGCAGCTTGCT
CCATTGCAAAAGTTGCAATGGCTGAATCTGAGGAGCCCAAACGAGGGACC
CCAGATGCTAAGAAGAAGTATGCTCCTGTTTGTGTCACAATGCCTACTGC
TGGAATCTGTCGCAAGTGAGAATGTTTTTTAATTTTCATGCTGTTGATGT
TAATTAGTGTCCAATTAATTGATATGAGATCAATGTTAAAAGCTGTGAGC
ATCTGTATCTTGTAATTGGAGAATCCTGTTTATTTTATCTTGTCTTTGTT
ACCCTTCCCT
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