FC921055

Overview
NameFC921055
Unique NameFC921055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9666 contig Ccv1_Contig9666:50..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921055 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:    2 SGSASISSADLFGYDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL 211
            +GSASISSAD +G+D D++++D+ ASDLINRLSFQAQQD+SSL NIAGET KKL +LAS + +DIQDR+L
Sbjct:  344 AGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLSSLVNIAGETKKKLGTLASGIFSDIQDRML 413
[Close]
BLAST of FC921055 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = 2 
Query:    2 SGSASISSADLFGYDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL 211
            SGSA+ISS+DLFG+  D++++D+ ASDLINR+SFQAQQD+SS+ N+A ET  KL + ASS+ +D+QDR+L
Sbjct:  333 SGSAAISSSDLFGHGPDDSNIDITASDLINRISFQAQQDMSSIANLAEETKNKLGTFASSIFSDLQDRML 402
[Close]
BLAST of FC921055 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.305e-14
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 2 
Query:    2 SGSASISSADLFGYDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSL 184
            SGS++ISSADLFG    +  LDL A DL+NRLS QAQQDISSLKN+A ET KKL S+ASSL
Sbjct:  333 SGSSAISSADLFGDGDGDFPLDLTAGDLLNRLSLQAQQDISSLKNMAEETKKKLGSVASSL 393
The following BLAST results are available for this feature:
BLAST of FC921055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD8_ARATH4.188e-2170.00Probable ADP-ribosylation factor GTPase-activating... [more]
AGD9_ARATH3.318e-1861.43Probable ADP-ribosylation factor GTPase-activating... [more]
AGD10_ARATH1.305e-1470.49ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionC32202E11EF RVDevelopN Citrus clementina cDNA clone C32202E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921055 ID=FC921055; Name=FC921055; organism=Citrus clementina; type=EST; length=549bp
GTCAGGTTCAGCATCGATCTCTAGTGCTGATCTGTTTGGTTATGACTCTG
ACAATGCCTCACTTGATCTTGCTGCTAGTGACCTCATCAACAGACTCTCA
TTCCAGGCACAACAAGATATCTCTTCTCTGAAGAACATTGCGGGAGAGAC
TGGAAAGAAACTTAGCTCCTTGGCGTCAAGTCTGATAACAGATATTCAAG
ACAGAATACTCTGAAAATCTTCGAATATGTCTGGAGTTTGTTACATTTAC
CAGCCTACATCTTGTGTAGGAAATGTAAAATGAGTTTGATCATAAAATTC
TTTTGGAAGACAAATAAAATTTTAGAATTCTGCTGGCATACTACCGACTG
GGCTTTTTATTGTGGTTTCAGCAGTGTTTGTTTTGAGACTAGTTTCATGT
GCCTTTCATTTAGTGAATCGATTCAATATTATGTACCTTCGTGGCTTCGT
TGTAAACCAAGGAACCTATACAAATATATATAAATATAATATTTGTAGCG
CTGTGGCCAGGGAACTTTACAAAAAATCCGTTTAAATTCATGAACCGTG
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