FC921066

Overview
NameFC921066
Unique NameFC921066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921066_ssr25 microsatellite FC921066_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig541 contig Ccv1_Contig541:363..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921066 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.198e-28
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 2 
Query:    2 CTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGASLETVTPIPYDVVNDLKGGY 193
            C EEFKLRKK+ND LKADAKARGE ISTKRQPKGPKPGFMVEG +LETVTPIPYDVVNDLKGGY
Sbjct:  101 CAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of FC921066 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.867e-28
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 2 
Query:    2 CTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGASLETVTPIPYDVVNDLKGGY 193
            C EEFKLRKKKNDELKA AKA GE ISTKRQPKGPKPGFMVEG +LETVTPIPYDVVNDLKGGY
Sbjct:  101 CAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
The following BLAST results are available for this feature:
BLAST of FC921066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL212_ARATH5.198e-2890.6360S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH8.867e-2890.6360S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC32202G01EF RVDevelopN Citrus clementina cDNA clone C32202G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921066 ID=FC921066; Name=FC921066; organism=Citrus clementina; type=EST; length=328bp
GTGTACCGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAACTCAAGG
CAGATGCTAAGGCAAGAGGTGAGGTCATCAGTACAAAGAGGCAGCCAAAG
GGCCCTAAACCTGGTTTCATGGTGGAAGGTGCATCATTGGAAACTGTCAC
TCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGTGGTTACTAGGTTA
TCTTTTTGGTATTGTTGCTGTTTTGTTACTTGTTGCAGACTTTTCTGGAC
ATGGTCTTATTTGGATGTATTTTCATCCTTACTAGTTTTGTTTTTGGAGA
GAAAAAAAAAAAAAAAAAAAAAAAAAAA
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