FC921070

Overview
NameFC921070
Unique NameFC921070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921070_ssr711 microsatellite FC921070_ssr711:711..722. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14240 contig Ccv1_Contig14240:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 84/105 (80.00%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            SRSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   27 SRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.421e-40
Identity = 84/105 (80.00%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            SRSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   27 SRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.162e-40
Identity = 83/105 (79.05%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            SRSVKAGLQFPVGRIGRYLKKGRY+QR+GTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   30 SRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.162e-40
Identity = 83/105 (79.05%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            SRSVKAGLQFPVGRIGRYLKKGRY+QR+GTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   30 SRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.129e-40
Identity = 83/105 (79.05%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            SRSVKAGLQFPVGRIGRYLK+GRYSQR+GTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.129e-40
Identity = 83/105 (79.05%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            SRSVKAGLQFPVGRIGRYLK+GRYSQR+GTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.201e-39
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            +RS++AGLQFPVGRIGRYLKKGRY+QRVGTGAP                  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   25 TRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 129
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.569e-39
Identity = 83/105 (79.05%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            SRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   25 SRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKA 129
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39
Identity = 80/105 (76.19%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            +RS++AGLQFPVGRIGRYLKKGRY+QRVGTGAP                  GNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK+
Sbjct:   26 TRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKT 130
[Close]
BLAST of FC921070 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39
Identity = 81/105 (77.14%), Postives = 86/105 (81.90%), Query Frame = 2 
Query:  182 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 496
            +RS +AGLQFPVGRIGRYLKKGRY+QRVGTGAP                  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK+
Sbjct:   24 TRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128
The following BLAST results are available for this feature:
BLAST of FC921070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A6_ORYSJ2.421e-4080.00Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI2.421e-4080.00Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A5_ORYSJ3.162e-4079.05Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI3.162e-4079.05Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A4_ORYSJ4.129e-4079.05Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI4.129e-4079.05Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A2_MEDTR1.201e-3978.10Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A_EUPES1.569e-3979.05Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A3_MEDTR3.495e-3976.19Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]
H2A1_MEDTR3.495e-3977.14Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]

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Properties
Property NameValue
Genbank descriptionC32202G05EF RVDevelopN Citrus clementina cDNA clone C32202G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921070 ID=FC921070; Name=FC921070; organism=Citrus clementina; type=EST; length=729bp
GGGTCACCAGTCACACTACATTTCTTTTAGTTTCCGTTTGTTTCTCGAGA
AAATTTTGTTTTTGCCATTTTTTTCTCCCCCCTAACTTCTTCTTGACTTT
GCTGGTGTGATGGAGAGTGGAGGAAAGGTGAAGAGAGGAGCAGGAGGAAG
GAAAGGGGGTGGTCCAAAGAAGAAACCGGTCTCGCGGTCGGTGAAAGCCG
GTCTGCAGTTCCCGGTCGGTCGGATCGGTCGCTATCTGAAGAAGGGACGC
TACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTGTACT
TGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCGAGGG
ACAACAAGAAGAATAGGATCATCCCAAGGCATGTTCTATTGGCTGTAAGA
AACGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTCATGG
TGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCTGAGA
AGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTCCCCA
AAGAAGGCTTAGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGTTACT
TCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATTTAGG
GACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTTTTGC
TTGGACTGTAGAATGAATGAATCATAGTA
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