FC921079

Overview
NameFC921079
Unique NameFC921079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10020 contig Ccv1_Contig10020:9..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921079 vs. ExPASy Swiss-Prot
Match: Y1815_ARATH (UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana GN=At1g28150 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.243e-21
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 3 
Query:  171 ACFSSPIDEPILKEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAE 353
            +CF+ P  EPIL EALKEP+AF+GGMFAGLLRLDLN++PLKDWVTRTVEA+GITEEE+ A+
Sbjct:   48 SCFNLP-QEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDAD 107
The following BLAST results are available for this feature:
BLAST of FC921079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1815_ARATH7.243e-2177.05UPF0426 protein At1g28150, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC32202H02EF RVDevelopN Citrus clementina cDNA clone C32202H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921079 ID=FC921079; Name=FC921079; organism=Citrus clementina; type=EST; length=551bp
GGGAAACAATGGCTCAATCTCTCAACAATTCTCCTTCATGTACACTGTAT
CAAATAAGGAATCCAAGACAAAACTCATCTCCACCACCATCATCATTATT
GCTTAAACGCAGCAGCAGTTCTAGTTTAAGATTAAGGAGTAATAATTATA
GAAACAAAAATGGAGTGAGAGCGTGTTTCTCCAGTCCCATCGATGAACCC
ATCCTCAAAGAAGCTCTTAAGGAGCCGGTTGCCTTCGTGGGTGGCATGTT
TGCCGGTCTTCTAAGGCTTGATTTGAACGATGATCCACTGAAGGACTGGG
TTACAAGAACAGTGGAAGCCGCTGGAATTACAGAAGAAGAAATCAAAGCT
GAAGACTCAAAATCAGATGAAGAAGTTCCAGAACAGATAGAGATTGAATG
ATGAGATTTTGGTCCTCCCTGTTTCATATTTATCTATCTGCATTCGGTCA
TTGCATTTATACATTAAAGTACTGAATAAACAAAAAACATTGAGATCAAG
TAAATTGTCAATCGATGGTGGTTCTAAAAAAAAAAAAAAAAAAAAAAAAA
A
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