FC921088

Overview
NameFC921088
Unique NameFC921088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig82 contig Ccv1_Contig82:717..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_VITVI (NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.370e-27
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            LEVLKNWPER IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLPIT
Sbjct:  171 LEVLKNWPERRIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPIT 229          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_PHAVU (NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.257e-26
Identity = 54/59 (91.53%), Postives = 59/59 (100.00%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            LEVLKNWPE+SIQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPS+CLP+T
Sbjct:  169 LEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPVT 227          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOC_ORYSJ (NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.144e-26
Identity = 54/59 (91.53%), Postives = 59/59 (100.00%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            L+VL+NWPER+IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLPIT
Sbjct:  219 LDVLRNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPIT 277          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOC_FLATR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.801e-26
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            LE+LKNWP + IQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSACLPIT
Sbjct:  227 LEILKNWPHKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPIT 285          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOC_FLAPR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.801e-26
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            LE+LKNWP++ IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGGIRPSACLPIT
Sbjct:  227 LEILKNWPQKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPIT 285          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_POPTR (NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.148e-26
Identity = 52/59 (88.14%), Postives = 59/59 (100.00%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            L+VLKNWP++SIQVIVVTDGERILGLGDLGCQG+GIPVGKL+LYTALGG+RPSACLP+T
Sbjct:  171 LDVLKNWPQKSIQVIVVTDGERILGLGDLGCQGIGIPVGKLSLYTALGGVRPSACLPVT 229          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOC_SOLLC (NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            EVLKNWPE+ IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LY+ALGGIRPSACLP+T
Sbjct:  156 EVLKNWPEKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGIRPSACLPVT 213          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOC_MAIZE (NADP-dependent malic enzyme, chloroplastic OS=Zea mays GN=MOD1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.177e-24
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            LEVL+NWP R+IQVI VTDGERILGLGDLGCQGMGIPVGKLALYTALGG+ PS CLPIT
Sbjct:  216 LEVLRNWPHRNIQVICVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVDPSVCLPIT 274          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_MESCR (NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            LE+L+NWPE+ IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LY+ALGG+ PSACLPIT
Sbjct:  165 LELLRNWPEKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVCPSACLPIT 223          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_ANAPL (NADP-dependent malic enzyme OS=Anas platyrhynchos GN=ME1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.116e-20
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            +LK+WPE  I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P  CLP+
Sbjct:  125 MLKSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHECLPV 180          
The following BLAST results are available for this feature:
BLAST of FC921088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
MAOX_VITVI7.370e-2794.92NADP-dependent malic enzyme OS=Vitis vinifera PE=2... [more]
MAOX_PHAVU1.257e-2691.53NADP-dependent malic enzyme OS=Phaseolus vulgaris ... [more]
MAOC_ORYSJ2.144e-2691.53NADP-dependent malic enzyme, chloroplastic OS=Oryz... [more]
MAOC_FLATR2.801e-2691.53NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOC_FLAPR2.801e-2691.53NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_POPTR8.148e-2688.14NADP-dependent malic enzyme OS=Populus trichocarpa... [more]
MAOC_SOLLC1.064e-2591.38NADP-dependent malic enzyme, chloroplastic (Fragme... [more]
MAOC_MAIZE1.177e-2488.14NADP-dependent malic enzyme, chloroplastic OS=Zea ... [more]
MAOX_MESCR1.537e-2486.44NADP-dependent malic enzyme OS=Mesembryanthemum cr... [more]
MAOX_ANAPL5.116e-2076.79NADP-dependent malic enzyme OS=Anas platyrhynchos ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32101A01EF RVDevelopN Citrus clementina cDNA clone C32101A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921088 ID=FC921088; Name=FC921088; organism=Citrus clementina; type=EST; length=179bp
TTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAGGTTATTGTT
GTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGGCTGTCAGGG
GATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCACTTGGAGGCA
TTCGTCCCTCAGCATGTTTGCCCATAACC
back to top