FC921089

Overview
NameFC921089
Unique NameFC921089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:6..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.234e-66
Identity = 140/198 (70.71%), Postives = 155/198 (78.28%), Query Frame = 2
Query:   62 SSLVCSPLTVPLCISKKSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSV--KPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            +S + +PLT  LC +K       K+      +          KV++    SVVCKAVSV  K  T IEGLNIAEDVTQLIG TPMVYLNTI KGCVANIAAKLEIMEPCCSVKDRIGFSMI DAE+KGLI+PGK++LVEPTSGNTGIGLAFIAAS+GYKLILTMPASMSLERRV+LKAFGAELVLTD AKG +GAV K
Sbjct:    2 ASFINNPLT-SLCNTKSERNNLFKISLYEAQSLGFSKLNGSRKVAFP---SVVCKAVSVPTKSSTEIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSK 195          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.611e-66
Identity = 131/148 (88.51%), Postives = 139/148 (93.92%), Query Frame = 2
Query:  212 SVVCKAVSV--KPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            SVVCKAVSV  K  T IEGLNIAEDVTQLIG TPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMI+DAE+KGLI+PGK++LVEPTSGNTGIGLAFIAAS+GYKLILTMPASMSLERRV+LKAFGAELVLTD AKG +GAV K
Sbjct:   46 SVVCKAVSVQTKSPTEIEGLNIAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSK 193          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.104e-66
Identity = 135/199 (67.84%), Postives = 160/199 (80.40%), Query Frame = 2
Query:   56 TSSSLVCSPLTVPLCISKKS-SLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            +SS+ + +PLT      K S  L++L L   S   AA  +    + +  +  + VVCKAVS+KP+ G+EGLNIA++  QLIGKTPMVYLN +VKGCVA++AAKLEIMEPCCSVKDRIG+SMI DAE+KGLITPGKS+LVE TSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLL+AFGAELVLT+ AKG  GA+QK
Sbjct:    5 SSSAFLLNPLTSRHRPFKYSPELSSLSLS--SRKAAAFDVSSAAFTLKRQSRSDVVCKAVSIKPEAGVEGLNIADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKGMTGAIQK 201          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 4.388e-64
Identity = 132/204 (64.71%), Postives = 158/204 (77.45%), Query Frame = 2
Query:   56 TSSSLVCSPLTVPLCISK------KSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            +SS+L+ +PLT     S          +++L     S  + A + +   +    +   SVVC+AV  K +TG +GLNIA++V+QLIGKTPMVYLN+I KGCVANIAAKLEIMEPCCSVKDRIG+SM+ DAEQKG I+PGKS+LVEPTSGNTGIGLAFIAAS+GY+LILTMPASMS+ERRVLLKAFGAELVLTD AKG  GAVQK
Sbjct:   38 SSSALLLNPLTSSSSSSTLRRFRCSPEISSLSFSSASDFSLAMKRQSRSFADGSERDPSVVCEAV--KRETGPDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQK 239          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 6.336e-63
Identity = 128/188 (68.09%), Postives = 150/188 (79.79%), Query Frame = 2
Query:   86 TVPLCISKKSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            T  L + +  +LA  ++G  S ++       N  KVS  P   + CKAVS+ P + IEGLNIAEDV+QLIGKTPMVYLN + KG VANIAAKLE MEPCCSVKDRIG+SMI DAEQKG+ITPGK+ LVEPTSGNTGIGLAFIAA++GYK+ LTMPASMS+ERRV+LKAFGAELVLTD AKG +GAV+K
Sbjct:   14 TSKLELREVKNLANFRVGPPSSLSC-----NNFKKVSSSP---ITCKAVSLSPPSTIEGLNIAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELVLTDPAKGMKGAVEK 193          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.198e-53
Identity = 102/127 (80.31%), Postives = 117/127 (92.13%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            IA+DVT+LIGKTP+VYLNT+  GCVA +AAKLE MEPC SVKDRIGFSMI DAE+ GLITPG+S+L+EPTSGNTGIGLAFIAA+KGYKLI+TMPASMSLERR +L+AFGAEL+LTD AKG +GAVQK
Sbjct:    8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQK 134          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.551e-53
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = 2
Query:  260 GLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            G +IA DVT LIG TP+VYLN +V GC A IAAKLEIMEPC SVKDRIG+SMI DAE+KGLITPGKS+L+EPTSGNTGIGLAF+AA+KGYKLILTMPASMS+ERR++LKAFGAELVLTD   G +GA+QK
Sbjct:    5 GQSIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQK 134          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.259e-52
Identity = 99/127 (77.95%), Postives = 117/127 (92.13%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            IA+DVT+LIG TP+VYLN +V GCVA +AAKLE+MEPC SVKDRIG+SMI+DAE KGLITPG+S+L+EPTSGNTGIGLAFIAA+KGY+LI+ MPASMSLERR +L+AFGAELVLTD A+G +GAVQK
Sbjct:    8 IAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQK 134          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.583e-52
Identity = 97/130 (74.62%), Postives = 115/130 (88.46%), Query Frame = 2
Query:  260 GLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            G  IA+DVT+LIG TP+VYLN +  GCV  +AAKLE MEPC SVKDRIG+SMI DAE+KGLITPGKS+L+EPTSGNTGIGLAF+AA+KGY+L+LTMPASMS+ERR++LKAFGAEL+LTD   G +GAVQK
Sbjct:    2 GETIAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQK 131          
BLAST of FC921089 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.563e-51
Identity = 95/127 (74.80%), Postives = 114/127 (89.76%), Query Frame = 2
Query:  269 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGXEGAVQK 649
            IA+DVT+LIG TP+VYLN + +GCV  +AAKLE+MEPC SVKDRIGFSMI+DAEQKGLI PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS+ERR++L AFG ELVLTD AKG +GA+ K
Sbjct:    5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAK 131          
The following BLAST results are available for this feature:
BLAST of FC921089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSKP_SOLTU1.234e-6670.71Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_CAPAN1.611e-6688.51Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_ARATH2.104e-6667.84Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH4.388e-6464.71Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSKP_SPIOL6.336e-6368.09Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK_SPIOL1.198e-5380.31Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK2_ORYSJ4.551e-5378.46Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_CITLA2.259e-5277.95Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK1_ORYSJ8.583e-5274.62Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK1_BRAJU5.563e-5174.80Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32101A02EF RVDevelopN Citrus clementina cDNA clone C32101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921089 ID=FC921089; Name=FC921089; organism=Citrus clementina; type=EST; length=651bp
GATCATCAGTTGGTCGTCAGACAGTTAGTCCCACAAAGTTCCAAAAACAA
TGGCCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGTTCCTCTCTGC
ATCTCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCC
CATAACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACA
AACCCTGCAACTCTGTTGTGTGCAAGGCTGTCTCTGTGAAGCCGCAGACT
GGGATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAA
GACGCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACA
TTGCTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGG
ATTGGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCC
TGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCC
TTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCA
GCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGA
GCTTGTATTAACTGATTCAGCAAAAGGCATNGAAGGGGCTGTGCAGAAAG
C
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