FC921092

Overview
NameFC921092
Unique NameFC921092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14244 contig Ccv1_Contig14244:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 3.723e-72
Identity = 132/205 (64.39%), Postives = 166/205 (80.98%), Query Frame = 1
Query:   91 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSS-----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGL-FKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY*RTVW-IDDAF 684
            +NKQVI K++V GFPKE+D     +++ L+V EGS ++LVKNLYLSCDPYMR+RM     PD SS     + PG PI G+GV++V++SGHP++KKGDL+WG  GWEEYS+I     + FKI HTDVPLSYYTG+LGMPGMTA+AGFYE+C+PKKGE +YVSAASGAVGQLVGQFAK+MGCYVVGSAGS+E+++  +T +  DDAF
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSKSVLVKNLYLSCDPYMRSRMG---KPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAF 204          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.413e-71
Identity = 128/204 (62.75%), Postives = 165/204 (80.88%), Query Frame = 1
Query:   91 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSS----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKN-PQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY*RTVW-IDDAF 684
            +NKQVILK+YV GFP E+D     +++ L+V EG+N++LVKNLYLSCDPYMR RM    DP  ++    +TPG PI+G+GV+++++SGHP++KKGDL+WG   WEEYS+I       FKI HTDVPLSYYTG+LGMPGMTA+AGFYE+C+PK+GE +YVSAASGAVGQLVGQ AK+MGCYVVGSAGS+E+++  +T +  DDAF
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMG-KPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAF 206          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 72/191 (37.70%), Postives = 109/191 (57.07%), Query Frame = 1
Query:   94 NKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY 654
            N++ +L +   G P   +  ++   ++     G   +L++ +YLS DPYMR RMS     D  S++P    G  + G  V++VV+S HP+++ GD V G +GW++Y  I +   L K+       S+  G+LGMPG TA+ G  +I  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  E+  +
Sbjct:    8 NRRWVLASRPHGAPVPENFRLEEDDVATP---GEGQVLLRTVYLSLDPYMRGRMS-----DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRH 189          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 83/201 (41.29%), Postives = 114/201 (56.72%), Query Frame = 1
Query:   85 VLSNKQVILKNYVE---GFPKETDMLV----KASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI-KNPQGLFKIHHTD--VPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRER 645
            ++SN  VI+K Y++   G+P   + L     +    + +V+E    +L+KN+Y S DPY+R RM   Q P  +S+ P    G P     VAKVV S   ++K G  V   +GWEEY+ + K   G  +  +    +PL  + G LGMP  TA+ G   I  PK GE IY+SAASGAVGQ+ GQ AK MG +VVGS GS E+
Sbjct:    1 MVSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDE-ETPVLLKNIYTSVDPYLRMRM---QSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEK 197          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 76/188 (40.43%), Postives = 103/188 (54.79%), Query Frame = 1
Query:   91 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY 654
            S +Q+ L    +G P   D   +   +    E     +LVK LY+S DPYMR RM   +      F     + G  +A+VV  G+   KKGD+V G   W+E+S +     L KI  +  P S Y GILGM G+TA+ G  +I  PK+GE + VS A+GAVG  VGQ AK+ G  VVG AGS E+++Y
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFETIPVP---EPKQGEVLVKTLYVSVDPYMRGRMQDTKSY-VEPFALDKALSGGVIAEVVSDGN-HLKKGDIVIGNLSWQEFSAVSE-SALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDY 185          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 1
Query:   97 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIH---HTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY*RTVWIDDAF 684
            K   LK + EGFP + +  +K + +       +  +L++ L+LS DPYMR                G  + G  VA+VV+S +  F KG +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA+ G  +IC  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS E++ Y + +  D AF
Sbjct:    5 KSWTLKKHFEGFPTDGNFELKTTELP---PLNNGEVLLEALFLSVDPYMRVAAK--------KLKEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKKLGFDVAF 191          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.765e-27
Identity = 76/199 (38.19%), Postives = 114/199 (57.29%), Query Frame = 1
Query:   97 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY*RTVWIDDAF 684
            K   LK + +G P ++D  +K   +   ++ G   +L++ L+LS DPYMR      ++        G+ + G  VA+VV+S +  F  G +V   +GW  +  I + +GL K+       +PLS   G +GMPG+TA+ G  E+C  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS E++ Y + +  D AF
Sbjct:    5 KSWTLKKHFQGKPTQSDFELKTVELP-PLKNGE--VLLEALFLSVDPYMRIASKRLKE--------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAF 191          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 73/198 (36.87%), Postives = 109/198 (55.05%), Query Frame = 1
Query:   97 KQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQ--GLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY*RTVWIDDAF 684
            K   LK +  G P ++D  +K   +       +  +L++ L+LS DPYMR      ++        G  + G  VA+VV+S +P +  G LV   +GW  +S+    Q   L       +PLS   G +GMPG+TA+ G  EIC  K G+ + V+AA+GAVG +VGQ AK+ GC VVG+AGS E+++Y + +  D AF
Sbjct:    5 KNWTLKKHFHGHPTDSDFELKTVELP---PLNNGEVLLEALFLSVDPYMRLGSKRLKE--------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLKKIGFDFAF 191          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26
Identity = 74/195 (37.95%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  109 LKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHT---DVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY*RTVWIDDAF 684
            LK + EGFP +++  ++ + +       +  +L++ L+LS DPYMR                G  + G  VA+VV+S +  F  G +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA+ G  +IC  K GE + V+AA+GAVG +VGQ AKL GC VVG+AGS E++ Y + +  D AF
Sbjct:    9 LKKHFEGFPTDSNFELRTTELP---PLNNGEVLLEALFLSVDPYMRVAAK--------KLKEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHS-ISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKKLGFDVAF 191          
BLAST of FC921092 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 73/202 (36.14%), Postives = 112/202 (55.45%), Query Frame = 1
Query:   85 VLSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSRERLNY*RTVWIDDAF 684
            ++  K   LK +  G+P  +D  +K + +   ++ G   +L++ L+L+ DPYMR      ++        G  + G  VAKVV+S +    KG +V  + GW  +S+   K+ + L       +PLS   G +GMPG+TA+ G  EIC  K GE + V+AA+GAVG +VGQ AKL GC VVG+ GS E++ Y + +  D  F
Sbjct:    1 MVRTKTWTLKKHFVGYPTNSDFELKTAELP-PLKNGE--VLLEALFLTVDPYMRVAAKRLKE--------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVF 191          
The following BLAST results are available for this feature:
BLAST of FC921092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH3.723e-7264.39Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH2.413e-7162.75Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YNCB_ECOLI2.526e-2837.70Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YKM8_SCHPO2.526e-2841.29Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YFMJ_BACSU2.526e-2840.43Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_MOUSE5.628e-2839.20Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_CAVPO4.765e-2738.19Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_RABIT8.127e-2736.87Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_RAT1.061e-2637.95Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_HUMAN6.880e-2636.14Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]

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Properties
Property NameValue
Genbank descriptionC32101A05EF RVDevelopN Citrus clementina cDNA clone C32101A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921092 ID=FC921092; Name=FC921092; organism=Citrus clementina; type=EST; length=687bp
GAAACACACCGCCACTCAGCAACCGAAGGAAGAAACAGAGTGAAACAAGG
AAGAAACAGAGCAACGATGGCGGCTAACAGTGAAGTGTTGAGCAACAAGC
AGGTGATATTAAAGAACTATGTAGAAGGGTTTCCCAAAGAGACAGACATG
TTGGTAAAAGCAAGTTCAATTTCATTGAAAGTAGAGGAAGGCTCAAATGC
AATTCTCGTCAAGAATCTTTACTTGTCTTGCGATCCTTACATGAGAGCTC
GCATGTCCTTTAATCAAGATCCTGATTTCTCTTCTTTCACTCCTGGCTCT
CCCATAGAAGGATTTGGAGTGGCTAAGGTGGTGGATTCAGGGCACCCAGA
ATTCAAGAAAGGAGATTTAGTCTGGGGAACAACTGGGTGGGAAGAGTATA
GTCTCATAAAAAATCCTCAGGGCCTCTTTAAAATTCATCACACTGATGTT
CCCCTTTCTTATTATACTGGAATTCTTGGTATGCCTGGGATGACAGCTTG
GGCTGGTTTTTATGAAATTTGTGCTCCAAAGAAAGGCGAATACATCTATG
TTTCTGCAGCATCTGGTGCAGTTGGTCAGCTTGTTGGGCAATTTGCAAAG
TTGATGGGTTGCTATGTTGTTGGAAGTGCTGGCAGTAGAGAAAGGTTGAA
CTACTAAAGAACAGTTTGGATTGATGATGCTTTCATT
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