FC921095

Overview
NameFC921095
Unique NameFC921095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14560 contig Ccv1_Contig14560:84..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: PARK7_MESAU (Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 80/186 (43.01%), Postives = 116/186 (62.37%), Query Frame = 2
Query:   32 KKVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCR-DAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACA-STVESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMR 583
            K+ LV +A G+E +E VI +D++RR+G  VTVA +  +  V     V I  D  + D +    +D++ LPGG  GA NL ES V++ I+K+Q S   L AA+CA P  AL +  +  G K T +P   +++      S  ESRV++DG ++TSRGPGT+ EFA+A+VE L GKE AD+V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKKQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAADQVKAPLVLK 188          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: PARK7_CHICK (Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.789e-31
Identity = 82/188 (43.62%), Postives = 116/188 (61.70%), Query Frame = 2
Query:   32 KKVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCR-DAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQL---APACASTVESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMR 583
            K+ LV +A G+E +E VI  DV+RR+G  VTVA +  +  V     V I  DA + D R +  +D+I LPGG  GA NL ES  ++ I+K Q S   L AA+CA P  AL + G+  G K   +P   +++   A  C S  ESRV++DG ++TSRGPGT+ EF +A+VE L GKE A++V  PL+++
Sbjct:    4 KRALVILAKGAEEMETVIPTDVMRRAGIKVTVAGLTGKEPVQCSRDVLICPDASLEDARKEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPT-ALLAHGIGFGSKVITHPLAKDKMMNGAHYCYS--ESRVEKDGNILTSRGPGTSFEFGLAIVEALMGKEVAEQVKAPLILK 188          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: PARK7_MOUSE (Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.200e-30
Identity = 78/186 (41.94%), Postives = 116/186 (62.37%), Query Frame = 2
Query:   32 KKVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCR-DAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACA-STVESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMR 583
            K+ LV +A G+E +E VI +DV+RR+G  VTVA +  +  V     V I  D  + D +    +D++ LPGG  GA NL ES +++ I+K+Q S   L AA+CA P  AL +  +  G K T +P   +++      S  ESRV++DG ++TSRGPGT+ EFA+A+VE L GK+ A++V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPT-ALLAHEVGFGCKVTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVLK 188          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: PARK7_BOVIN (Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.401e-30
Identity = 78/186 (41.94%), Postives = 115/186 (61.83%), Query Frame = 2
Query:   32 KKVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCR-DAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACA-STVESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMR 583
            K+ LV +A G+E +E VI +DV+RR+G  VTVA +  +  V     V I  DA + D + +  +D++ LPGG  GA NL ES  ++ I+K+Q     L AA+CA P  AL +  +  G K T +P   +++      S  E+RV++DG ++TSRGPGT+ EFA+ +VE L GKE AD+V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGKEVADQVKAPLVLK 188          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: PARK7_DANRE (Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.360e-30
Identity = 75/186 (40.32%), Postives = 113/186 (60.75%), Query Frame = 2
Query:   32 KKVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDC-RDAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQL-APACASTVESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMR 583
            K+ LV +A G+E +E VI +DV+RR+G  VTVA +  +  V     V I  D+ + D  +   +D++ LPGG+ GA NL ES  ++ ++K Q     L AA+CA P  AL + G+  G   T +P   +++ A       E+RVQ+DG V+TSRGPGT+ EFA+ +VE+L G E A +V  PL+++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIAVTVAGLAGKEPVQCSREVMICPDSSLEDAHKQGPYDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPT-ALLAHGIAYGSTVTTHPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVEELMGAEVAAQVKAPLILK 188          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: PARK7_HUMAN (Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.092e-29
Identity = 78/186 (41.94%), Postives = 116/186 (62.37%), Query Frame = 2
Query:   32 KKVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCR-DAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACASTV-ESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMR 583
            K+ LV +A G+E +E VI +DV+RR+G  VTVA +  +  V     V I  DA + D + +  +D++ LPGG  GA NL ES  ++ I+K+Q +   L AA+CA P  AL +  +  G K T +P   +++      T  E+RV++DG ++TSRGPGT+ EFA+A+VE L GKE A +V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: PARK7_CERAE (Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.426e-29
Identity = 77/186 (41.40%), Postives = 116/186 (62.37%), Query Frame = 2
Query:   32 KKVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCR-DAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACASTV-ESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMR 583
            K+ LV +A G+E +E VI +DV+RR+G  VT+A +  +  V     V I  DA + D + +  +D++ LPGG  GA NL ES  ++ I+K+Q +   L AA+CA P  AL +  +  G K T +P   +++      T  E+RV++DG ++TSRGPGT+ EFA+A+VE L GKE A +V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTIAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: PARK7_RAT (Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 75/186 (40.32%), Postives = 116/186 (62.37%), Query Frame = 2
Query:   32 KKVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCR-DAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACA-STVESRVQQDGKVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMR 583
            K+ LV +A G+E +E VI +D++RR+G  VTVA +  +  V     V I  D  + + +    +D++ LPGG  GA NL ES +++ I+K+Q +   L AA+CA P  AL +  +  G K T +P   +++      S  ESRV++DG ++TSRGPGT+ EFA+A+VE L GK+ A++V  PLV++
Sbjct:    4 KRALVILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKTQGPYDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPT-ALLAHEVGFGCKVTSHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPLVLK 188          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: THIJ_ECOLI (Protein thiJ OS=Escherichia coli (strain K12) GN=thiJ PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 73/186 (39.25%), Postives = 112/186 (60.22%), Query Frame = 2
Query:   41 LVPVANGSEPIEAVITIDVLRRSGADVTVASV--EKQLRVDACHGVKIVADALVSDCRDAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACASTVESRVQQDG--KVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMRA 586
            LV +A GSE  EAV TID+L R G  VT ASV  +  L +    GVK++ADA + +  D  +D+I LPGG+ GA   ++S +L   VK+   +G + AA+CA+PA  L    +      T +P+  +++ PA    ++ RV  D   K++TS+GPGT ++F + +++ L G+E+A EV+  LVM A
Sbjct:    6 LVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKI-PA-EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAA 189          
BLAST of FC921095 vs. ExPASy Swiss-Prot
Match: THIJ_SALTY (Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.381e-24
Identity = 72/188 (38.30%), Postives = 112/188 (59.57%), Query Frame = 2
Query:   35 KVLVPVANGSEPIEAVITIDVLRRSGADVTVASV--EKQLRVDACHGVKIVADALVSDCRDAVFDLIALPGGMPGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACASTVESRVQQDG--KVVTSRGPGTTMEFAVALVEQLYGKERADEVSGPLVMRA 586
            + LV +A GSE  EAV TID+L R G  VT ASV  +  L +    GVK++ADA + +  D  +D+I LPGG+ GA   ++S +L   VK+   +G + AA+CA+ A  L    +      T +P+  +++ PA    ++ RV  D   K++TS+GPGT ++F + +++ L G+E+A EV+  LVM A
Sbjct:    4 QALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTGFPALKDKI-PA-EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHEVASQLVMAA 189          
The following BLAST results are available for this feature:
BLAST of FC921095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PARK7_MESAU1.167e-3143.01Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1... [more]
PARK7_CHICK5.789e-3143.62Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1[more]
PARK7_MOUSE2.200e-3041.94Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1[more]
PARK7_BOVIN6.401e-3041.94Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1[more]
PARK7_DANRE8.360e-3040.32Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1[more]
PARK7_HUMAN1.092e-2941.94Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2[more]
PARK7_CERAE1.426e-2941.40Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE... [more]
PARK7_RAT4.149e-2940.32Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV... [more]
THIJ_ECOLI9.565e-2639.25Protein thiJ OS=Escherichia coli (strain K12) GN=t... [more]
THIJ_SALTY1.381e-2438.30Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32101A09EF RVDevelopN Citrus clementina cDNA clone C32101A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921095 ID=FC921095; Name=FC921095; organism=Citrus clementina; type=EST; length=717bp
GACAGCAACAGCTACAATGTCTTCAACTTCCAAAAAGGTTTTGGTGCCTG
TTGCGAACGGGAGTGAGCCGATTGAGGCCGTGATAACGATCGATGTTTTG
AGAAGGTCTGGAGCTGACGTCACGGTTGCGTCTGTGGAGAAACAGCTTCG
TGTCGACGCGTGTCATGGTGTCAAGATTGTCGCTGATGCTCTTGTGTCTG
ACTGCCGCGACGCTGTTTTTGATCTTATAGCTCTTCCCGGTGGCATGCCC
GGTGCTACCAATCTGAAGGAATCTGATGTATTAGAAAGCATTGTGAAGAA
GCAGGCCTCAGCTGGGTGCCTTTATGCTGCTGTCTGTGCTTCACCTGCTG
TGGCATTAGGGTCTTGGGGTCTGTTGAAGGGATTGAAGGCTACTTGTTAT
CCGTCATTTATGGAGCAATTAGCTCCTGCTTGTGCATCAACTGTTGAATC
AAGAGTACAGCAGGATGGTAAAGTTGTTACGAGTCGTGGACCTGGCACTA
CTATGGAGTTTGCTGTTGCACTTGTTGAGCAGTTGTATGGGAAAGAGAGA
GCTGATGAAGTTTCTGGGCCACTGGTAATGCGTGCAAATCATGGAGATGA
ATACACTATTGCTGAATTCAATCCAATTCAGTGGACATTTGACAATTCTC
CCCAGATTCTTGTGCCTATTTGCAATGGTTCGGAAGAGATGGAAGCTGTT
ATGATAATTGATATTCT
back to top