FC921100

Overview
NameFC921100
Unique NameFC921100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14566 contig Ccv1_Contig14566:19..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921100 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 91/142 (64.08%), Postives = 112/142 (78.87%), Query Frame = 1 
Query:  250 NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMLESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVL 675
            N FDFS M+ +LNDPSI+E+AEQIAKDPAFN +AEQLQ+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  L++ +NP   +   ERMA++KEDP LKPILDEI++GGPSAMMKYWND +VL
Sbjct:   45 NAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSNPETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWNDPEVL 186
The following BLAST results are available for this feature:
BLAST of FC921100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH4.276e-4964.08Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32101B02EF RVDevelopN Citrus clementina cDNA clone C32101B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921100 ID=FC921100; Name=FC921100; organism=Citrus clementina; type=EST; length=675bp
GAGGTTTTATTCTTAATTTTAAACCCAATCTAATCTCAATCTCCTTCACA
GTCTCTCCGATTCAGCAGCTGTTTAGTTCGCATGGTGTCTCCTCCCACCA
AGGATGCTCCCGCTGATAAGAAAGCAGAAGGATCGACCCCTAAGTCAGAA
GCAACTTCGGGGTCTGTTAGAGACTCATCCAGTTCGCCTTCCGCTGCTTC
TGCTGCTTCTGCTGCAAGTGCTTTTCCAGGAGTTGGTGGCGCTGCTCCAA
ATCCTTTTGATTTCTCCGCCATGAGTGGCCTTCTTAATGATCCGAGCATT
AAGGAACTAGCTGAACAGATTGCGAAAGATCCAGCATTCAATTCCATGGC
CGAGCAACTTCAGAAAACTTTGCATGGTGCAAATGCTGAGGAGAGTATTC
CACAGTTTGACACAACACAGTATTACTCCACCATGCAACAGGTTATGCAG
AATCCTCAGTTTATGACTATGGCTGAGCGCCTTGGTAATGCTTTAATGCA
GGACCCATCAATGTCTCATATGCTGGAGAGTTTGACAAACCCTACAAAAA
AAGACCAGATCGAGGAAAGAATGGCAAAAATCAAGGAAGATCCCTCTTTG
AAGCCTATTTTGGATGAGATAGAGTCTGGTGGACCATCTGCTATGATGAA
GTACTGGAATGATAAAGATGTTTTG
back to top