FC921105

Overview
NameFC921105
Unique NameFC921105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11008 contig Ccv1_Contig11008:38..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9_DROME (Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Drosophila melanogaster GN=Coq9 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  321 QARVLEASLRHVAKHGWGEAAMIAGARDVGLSPSIIGSFPRKDTALVEFFMDDCLQRLIDRI----DSG-EDLKDLIPSQRISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGD 704
            +A++L+A+L+HV + GW   A+I GA + G    + G FP    ALV  F   C  +L++ +    D G ++++D  P   + + VR RLEM  PY + WPQA+++ AQP + PT+  Q   LVD+I +  GD
Sbjct:  110 RAKILDAALQHVPQQGWTRQAIILGAEESGYPSVVHGMFPEGGFALVSHFNGKCNAQLVESLQQKTDGGKQEVED--PLDFLVQAVRQRLEMVTPYKTHWPQAMALLAQPQHAPTALAQVLTLVDDICYYSGD 240          
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9_XENTR (Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Xenopus tropicalis GN=coq9 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  321 QARVLEASLRHVAKHGWGEAAMIAGARDVGLSPSIIGSFPRKDTALVEFFMDDCLQRLIDRIDSGEDLKDLIPSQR------ISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDE 707
            Q R+L A+L+ V   GW   A+  GA+ + +S +  G F    + LV  F+  C  +L + ++  + L  L  S++      +   V  RL M  PYI +WPQAL +   P N+P+S K    +VD+IWH  GD+
Sbjct:   99 QQRILSAALQFVPDFGWSADAIAEGAKSLDMSAAAAGMFEDGGSELVLHFVTQCNSQLTELLEEEQKLVQLGTSEKKPTTQFLRDAVEARLRMHIPYIEQWPQALGMLLLPRNIPSSLKLLTAMVDDIWHYAGDQ 233          
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9_HUMAN (Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Homo sapiens GN=COQ9 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 3
Query:  321 QARVLEASLRHVAKHGWGEAAMIAGARDVGLSPSIIGSFPRKDTALVEFFMDDCLQRLIDRIDSGEDLKDLIPSQR------ISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDE 707
            Q R+L A+L  V  HGW   A+  GA+ +GLS +    F +  + L+  F+  C  RL   ++  + L  L  +++      +   V  RL M  PYI  WP+ALSI   P N+P+S      +VD++WH  GD+
Sbjct:  100 QHRILTAALEFVPAHGWTAEAIAEGAQSLGLSSAAASMFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEHWPRALSILMLPHNIPSSLSLLTSMVDDMWHYAGDQ 234          
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9B_XENLA (Ubiquinone biosynthesis protein COQ9-B, mitochondrial OS=Xenopus laevis GN=coq9-B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  321 QARVLEASLRHVAKHGWGEAAMIAGARDVGLSPSIIGSFPRKDTALVEFFMDDCLQRLIDRIDSGEDLKDLIPSQR------ISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDE 707
            Q R+L A+L+ V   GW   A+  GA+ + +S +  G F    + LV  F+  C  +L + ++    L  L  S++      +   V+ RL M  PYI +WPQAL +   P N+P+S K  + +VD++WH  GD+
Sbjct:   75 QQRILTAALQFVPDFGWSADAIAEGAKSLDMSAAAGGMFEDGGSELVLHFVTQCNLQLTELLEKEHKLVQLGTSEKKPTAQFLRDAVKARLRMHIPYIEQWPQALGMLLLPRNIPSSLKLLSAMVDDMWHYAGDQ 209          
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9A_XENLA (Ubiquinone biosynthesis protein COQ9-A, mitochondrial OS=Xenopus laevis GN=coq9-A PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = 3
Query:  321 QARVLEASLRHVAKHGWGEAAMIAGARDVGLSPSIIGSFPRKDTALVEFFMDDCLQRLIDRIDSGEDLKDLIPSQR------ISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDE 707
            Q ++L A+L+ V   GW   A+  GA+ + +S +  G F    + L+  F+  C  +L + ++  + L  L  S++      +   V  RL M  PYI  WPQAL +   P N+P+S K    +VD+IWH  GD+
Sbjct:   99 QQQILSAALQFVPDFGWSADAIAEGAKSLDMSAAAAGMFEDGGSELILHFVTQCNLQLTELLEKEQKLVQLGTSEKKPTAQFLRDAVEARLRMHIPYIEHWPQALGMLLLPRNIPSSLKLLTAMVDDIWHYAGDQ 233          
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9_RAT (Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Rattus norvegicus GN=Coq9 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 3
Query:  321 QARVLEASLRHVAKHGWGEAAMIAGARDVGLSPSIIGSFPRKDTALVEFFMDDCLQRLIDRIDSGEDLKDLIPSQR------ISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDE 707
            Q R+L A+L  V  HGW   A+  GA+ +GLS +    F    + L+  F+  C  RL   ++  + L  L  +++      +   V  RL M  PYI  WP+ALSI   P N+P S      +VD++WH  GD+
Sbjct:   94 QHRILTAALEFVPDHGWTAEAIAEGAQSLGLSSAAASMFGSDGSELILHFVTQCNARLNHVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEHWPRALSILLLPQNIPPSLSLLTSMVDDMWHYAGDQ 228          
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9_MOUSE (Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Mus musculus GN=Coq9 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 3
Query:  321 QARVLEASLRHVAKHGWGEAAMIAGARDVGLSPSIIGSFPRKDTALVEFFMDDCLQRLIDRIDSGEDLKDLIPSQR------ISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDE 707
            Q R+L A+L  V  HGW   A+  GA+ +GLS +    F    + L+  F+  C  RL   ++  + L  L  +++      +   V  RL M  PYI  WP+ALSI   P N+P S      +VD++WH  GD+
Sbjct:   95 QHRILTAALEFVPAHGWTAEAIAEGAQSLGLSSAAASMFGSDGSELILHFVTQCNARLNQVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRMLIPYIEHWPRALSILLLPHNIPPSLNLLTSMVDDMWHYAGDQ 229          
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9_BOVIN (Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Bos taurus GN=COQ9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 3
Query:  321 QARVLEASLRHVAKHGWGEAAMIAGARDVGLSPSIIGSFPRKDTALVEFFMDDCLQRLIDRIDSGEDLKDLIPSQR------ISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDE 707
            Q R+L A+L  V  HGW   A+  GA+ +GLS +    F    + L+  F+  C  RL   ++  + L  L  +++      +   V  RL M  PYI  WP+A SI   P N+P S      +VD++WH  GD+
Sbjct:  101 QHRILTAALEFVPTHGWTAEAIAEGAQSLGLSSAAASMFGDDGSELILHFVTQCNARLTHVLEEEQKLVQLGQAEKKKTDKFLRDAVETRLRMLIPYIQHWPRAFSILMLPHNIPPSLNLLTSMVDDMWHYAGDQ 235          
BLAST of FC921105 vs. ExPASy Swiss-Prot
Match: COQ9_DICDI (Probable ubiquinone biosynthesis protein coq9, mitochondrial OS=Dictyostelium discoideum GN=coq9 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 39/135 (28.89%), Postives = 69/135 (51.11%), Query Frame = 3
Query:  327 RVLEASLRHVAKHGWGEAAMIAGARDVGLSP---SIIGSFPRKDTALVEFFMDDCLQRLIDRIDSGED-----LKDLIPSQRISKLVRIRLEMRAPYISKWPQALSIQAQPLNVPTSFKQRAMLVDEIWHAVGDE 707
            ++LE SL++V  +GW   A+     ++G  P    I+G     + AL  +F+  C   L+ ++   E+     L  L   +++   +++RL M  P+I +W +A+ + A P N+  S      LVD IW+ VGD+
Sbjct:  102 KILENSLKYVNSYGWTSEAVSKACIEMGYPPITQGILGEDSAYELAL--YFVTKCNTDLMIKLSDAENSEQQLLSGLSKKEKVKLALKLRLSMIKPFIGRWSEAMQLLANPKNIVNSSPSMLTLVDNIWYLVGDK 234          
The following BLAST results are available for this feature:
BLAST of FC921105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
COQ9_DROME4.701e-1737.59Ubiquinone biosynthesis protein COQ9, mitochondria... [more]
COQ9_XENTR8.019e-1734.07Ubiquinone biosynthesis protein COQ9, mitochondria... [more]
COQ9_HUMAN3.047e-1634.07Ubiquinone biosynthesis protein COQ9, mitochondria... [more]
COQ9B_XENLA6.788e-1633.33Ubiquinone biosynthesis protein COQ9-B, mitochondr... [more]
COQ9A_XENLA8.866e-1632.59Ubiquinone biosynthesis protein COQ9-A, mitochondr... [more]
COQ9_RAT1.158e-1534.07Ubiquinone biosynthesis protein COQ9, mitochondria... [more]
COQ9_MOUSE1.158e-1534.07Ubiquinone biosynthesis protein COQ9, mitochondria... [more]
COQ9_BOVIN3.369e-1533.33Ubiquinone biosynthesis protein COQ9, mitochondria... [more]
COQ9_DICDI2.951e-1128.89Probable ubiquinone biosynthesis protein coq9, mit... [more]
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Properties
Property NameValue
Genbank descriptionC32101B08EF RVDevelopN Citrus clementina cDNA clone C32101B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921105 ID=FC921105; Name=FC921105; organism=Citrus clementina; type=EST; length=709bp
GAGTGAAGCAAATTATCGAACACAAAACGAACAAGATGTACAGAACGGCA
GTGAAACGCCTACTCTCGCACCGTGTGCCGTCGATTAACGTTAGCAGCGG
CCGTACGCGATTACTCCCTAATCTCCGTCAAATCACTTGCTCTTCTCGAT
TTTCCACTTCCACCGTAAATCCCCAATCAGGCCCTAATCATCAAGTCAAC
AATGAAGCCCCTAATTTCACGGATTCCAAGACGACGTCGTCTTCGTCTGC
TGCAGAGGAAGCTCGTGATGCTCGCAGCCATAAGAGGGAGAGACCGAGAG
TTGTGGAGTACCGAGACGAGCAGGCGCGAGTGCTCGAGGCGTCTCTGCGC
CACGTGGCGAAGCACGGATGGGGCGAGGCGGCTATGATTGCAGGCGCAAG
GGACGTTGGCTTGTCTCCTTCCATCATTGGATCTTTCCCCAGAAAGGACA
CCGCTCTCGTTGAGTTTTTTATGGATGATTGCTTACAAAGGCTAATTGAT
AGAATTGACTCGGGGGAGGATTTAAAGGACTTGATTCCGAGTCAGCGCAT
CTCGAAGCTGGTTCGAATTCGTCTGGAAATGCGAGCGCCTTACATTTCTA
AGTGGCCTCAGGCTCTTAGCATCCAAGCTCAGCCATTGAATGTACCCACT
AGTTTTAAACAGAGGGCAATGCTGGTTGATGAGATTTGGCATGCTGTTGG
GGATGAGGC
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