FC921106

Overview
NameFC921106
Unique NameFC921106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921106 vs. ExPASy Swiss-Prot
Match: LIGA_PONAB (Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 60/190 (31.58%), Postives = 87/190 (45.79%), Query Frame = 3
Query:   15 EDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIXXXXXXXXXXXXQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKHIEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFK 581
            E +D  L +C L AL   VK  DLP+  ST   +H+  C P G  LDI            Q      +I VKE     ES++ +V+  HP   SF  PE  P    SQ +   + +  QP    ++  +Y     +  +F   G   G     SE   +V NY +K++LV   +K++V LDP LCD + +
Sbjct:  262 EQMDELLQQCFLHALKCRVKKADLPLLASTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIV-AVDWKHPRITSFVIPEPSP---TSQTIQEGSRE--QPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILE 445          
BLAST of FC921106 vs. ExPASy Swiss-Prot
Match: LIGA_HUMAN (Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 60/190 (31.58%), Postives = 87/190 (45.79%), Query Frame = 3
Query:   15 EDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIXXXXXXXXXXXXQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKHIEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFK 581
            E +D  L +C L AL   VK  DLP+  ST   +H+  C P G  LDI            Q      +I VKE     ES++ +V+  HP   SF  PE  P    SQ +   + +  QP    ++  +Y     +  +F   G   G     SE   +V NY +K++LV   +K++V LDP LCD + +
Sbjct:  262 EQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIV-AVDWKHPRITSFVIPEPSP---TSQTIQEGSRE--QPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILE 445          
BLAST of FC921106 vs. ExPASy Swiss-Prot
Match: LIGA_BOVIN (Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 59/190 (31.05%), Postives = 88/190 (46.32%), Query Frame = 3
Query:   15 EDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIXXXXXXXXXXXXQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKHIEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFK 581
            E +D  L  C L AL  +V+  DLP+  STL  +H+  C P G  LDI            Q      +I V+E     ES++ +V+  HP   SF  PE  P    SQ +   + +  QP    ++  +Y     +  +F   G   G +   SE    V NY +K++LV   +K++V LDP LCD + +
Sbjct:  257 EQMDELLQTCFLHALKCSVRKADLPLLTSTLLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQHMQQEQIIQVQELSKGVESIV-AVDWKHPRITSFVIPEPSP---TSQTIQEGSRE--QPYHPPDIKPLYCVPASMTLLFQESGHKKGSVLEGSEVRTFVINYAKKNDLVDADNKNLVKLDPILCDCILE 440          
BLAST of FC921106 vs. ExPASy Swiss-Prot
Match: LIGA_RAT (Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 3
Query:   15 EDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIXXXXXXXXXXXXQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSF-KPEKRPAEKASQAVDHAASDNIQPAKHIEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFK 581
            E +D  L++C L AL + VK  DLP+  STL  +H+  C P G  LDI            Q      ++ VKE     ES++ +V+  HP   SF  PE      ASQ V   + +  +P    ++  +Y    ++  +F   G   G     SE   ++ +Y +++NLV   ++++V LDP LCD + +
Sbjct:  249 EQMDELLEQCFLHALKSRVKKADLPLLTSTLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIVQVKELSKGVESIV-AVDWRHPRITSFIVPE---PSLASQTVQEGSRE--KPYLPPDIKSLYCVPANMTQLFLESGHKKGSTLEGSEVRRIITDYAKRNNLVDADNRNLVKLDPILCDCILE 432          
BLAST of FC921106 vs. ExPASy Swiss-Prot
Match: LIGA_MOUSE (Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 55/190 (28.95%), Postives = 86/190 (45.26%), Query Frame = 3
Query:   15 EDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIXXXXXXXXXXXXQAKSSAGLISVKEDKYKKESMLFSVNRGHPDYLSFK-PEKRPAEKASQAVDHAASDNIQPAKHIEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKDNLVKPTDKSIVVLDPTLCDALFK 581
            E +D  L +C L AL + VK  DLP+  STL  +H+  C P G  LDI            Q      ++ VKE     ES++ +V+  HP   SF  PE     +  Q V        QP    ++  +Y    ++  +F   G   G     SE   ++ +Y +++ LV   ++++V LDP LCD + +
Sbjct:  249 EQMDDLLLRCFLHALKSRVKKADLPLLTSTLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIVQVKELSKGVESIV-AVDWRHPRITSFVIPEPSLTSQTVQEVSRE-----QPYLPPDIKSLYCVPANMTQLFLESGHKKGSTLEGSEVRKIITDYAKRNRLVDADNRNLVKLDPILCDCILE 432          
The following BLAST results are available for this feature:
BLAST of FC921106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LIGA_PONAB5.112e-1631.58Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1[more]
LIGA_HUMAN8.720e-1631.58Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3[more]
LIGA_BOVIN4.328e-1531.05Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1[more]
LIGA_RAT5.652e-1530.00Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1[more]
LIGA_MOUSE1.066e-1328.95Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3[more]
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Properties
Property NameValue
Genbank descriptionC32101B09EF RVDevelopN Citrus clementina cDNA clone C32101B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921106 ID=FC921106; Name=FC921106; organism=Citrus clementina; type=EST; length=703bp
ATGTTCTAACCACCGAGGATGTGGATGCTTATTTGGACAAATGCCTTCTG
CAAGCCTTGCATACGACAGTAAAGGATAAAGACCTTCCTATGCCTGGAAG
CACATTGTGGTCAAATCATATATTACCTTGTAGGCCTTCTGGTATCACAC
TGGATATCAAGAAATCGTCTCACAAGAAATTAACTAAGTTGTTACAGGCT
AAATCATCTGCAGGACTGATTTCAGTGAAAGAAGATAAATACAAGAAGGA
ATCGATGTTATTTTCTGTTAATCGTGGTCATCCAGACTACTTATCCTTCA
AGCCTGAGAAACGACCAGCAGAGAAAGCCAGTCAAGCTGTTGATCATGCT
GCTAGTGACAATATTCAGCCGGCAAAACACATCGAAGTCACAGAGGTTTA
TAAACCAAGTGTGCATGTCAATCCCATTTTTGCCTCTGTTGGTGCTGATA
CGGGCAGACTTTACACTTTTTCTGAAGCCTGTGATGTTGTCTTCAATTAC
ATTGAGAAAGACAATCTGGTTAAGCCAACTGACAAATCCATTGTAGTTTT
GGATCCAACACTATGTGATGCATTGTTCAAGGGAGCCATAAAAAAAGGAA
CAACATATCCAACTGAGATACATAAGAAAGATTTAGGATCAACATTTGTA
AATCGGATGCANGCCCATCATGTTGTGACCAGAGGAAGTCAGTCAGTTGT
TCG
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