FC921119

Overview
NameFC921119
Unique NameFC921119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6379 contig Ccv1_Contig6379:109..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921119 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 77/231 (33.33%), Postives = 123/231 (53.25%), Query Frame = 2
Query:   68 DPAPIPVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV-HNWINTG------GRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP-DQLISFIVRPHEKVQKFYI 718
            DP PI + E   P LT  L     LQ +E++    L GPE ++      +++TG  DG I ++   +    + + H    T       GRPLGI    ++      T+ VADAY GL +++   G + +L++ +   EGQK    + + V  DG  IYFTD+S+K+  R+++  + EG  +GRLL +D VTKE KVL+  L F NGV LSP +  +  +     +++++Y+
Sbjct:   65 DPQPISLKE--PPLLTGVLEPNNKLQKAERLWENQLVGPESIVNIGD--VLFTGTADGKILKIEDGEVQTVARIGHGPCGTPEDEPTCGRPLGIRVGPNN------TLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYV 285          
BLAST of FC921119 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 82/247 (33.20%), Postives = 125/247 (50.61%), Query Frame = 2
Query:   35 LAMLVYKLDSFDPAPIPVHEFTHPPL-TAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG-----------GRPLGIAFANSDPDADRITMIVADAYKGLLKISG---NSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP-DQLISFIVRPHEKVQKFYI 718
            L  LV      DP P+    F  PPL    L+    LQ +E++    L GPE +       +++TG  DG +  V L +   +++      +G           GRPLGI    + P+    T+ V DAYKGL +++       +LL+ E   EG+K    + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D  TKE KVL+  L F NGV LSP +  +  +     ++++FY+
Sbjct:   54 LGALVLLDSPIDPEPL---SFKEPPLFLGVLQPNTKLQQAERLFENQLVGPESIANIGD--VMFTGTADGRV--VKLENGEVETIAR--FGSGPCKTRDDEPACGRPLGI---RAGPNG---TLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYV 285          
BLAST of FC921119 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 81/231 (35.06%), Postives = 121/231 (52.38%), Query Frame = 2
Query:   26 PVFLAMLVYKLDSFDPAPIPVHEFTHPPLT-AALRNERMLQGSEKVGYGVLKGPEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG-----------GRPLGIAFANSDPDADRITMIVADAYKGLLKISG---NSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 661
            P+  AM++ +    DP P+    F  PPL    L     L+ +E++    L GPE +   AH   +++TG  DG +  V L +   +++      +G           GRPLGI    + P+    T+ VADAYKGL +++       +LL+ E   EG+     + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D VT+E KVL+  L F NGV LSP
Sbjct:   53 PLLGAMMLLE-SPIDPQPL---SFKEPPLLLGVLHPNTKLRQAERLFENQLVGPESI---AHIGDVMFTGTADGRV--VKLENGEIETIAR--FGSGPCKTRDDEPVCGRPLGI---RAGPNG---TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSP 266          
BLAST of FC921119 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 71/207 (34.30%), Postives = 109/207 (52.66%), Query Frame = 2
Query:   95 FTHPP-LTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN---------TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST---VLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQ 667
            F  PP +   L+    L+ +E++    L GPE ++      +++TG  DG +  V L +   +++               T GRPLGI    +       T+ V DAYKGL +++       +LL+ E   EG+K    + + +  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D VTKE KVL+  L F NGV LSP++
Sbjct:   32 FKEPPFMFGVLQPNTKLRQAERLFENQLNGPESIVNIGD--VLFTGTADGRV--VKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNG------TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEE 228          
BLAST of FC921119 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 72/207 (34.78%), Postives = 109/207 (52.66%), Query Frame = 2
Query:   95 FTHPP-LTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN---------TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST---VLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQ 667
            F  PP +   L     L+ +E++    L GPE ++      +++TG  DG +  V L +   +++               T GRPLGI    + P+    T+ V DAYKGL +++       +LL+ E   EG+K    + + V  DG  IYFTD+S+K+  R+Y+L + E   +GRLL +D VTKE KVL+  L F NGV LSP++
Sbjct:   71 FKEPPFMFGVLHPNTKLRQAERLFENQLSGPESIVNIGD--VLFTGTADGRV--VKLENGEIETIARFGSGPCKTRDDEPTCGRPLGI---RAGPNG---TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEE 267          
BLAST of FC921119 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 73/227 (32.16%), Postives = 113/227 (49.78%), Query Frame = 2
Query:   35 LAMLVYKLDSFDPAPIPVHEFTHPPL-TAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRV---------TLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNSTVLLTDEAE--GQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQ 667
            L ++V+ L+S  P    V     PPL T        L+ +E++    L GPE L       + YTG  DG I ++         T+   P  S  H   +T GRPLGI    +       T+ VADAY GL +++   G    L++ E    G++    + +DV  DG  +YFTD+S+++  R+++  I E   +GR+L +D  TKE  V++ +L F NG+ L PD+
Sbjct:   53 LLVVVFVLES--PIQPEVFSLNEPPLMTGCYEPNLKLRQAERLFEERLVGPESLANIGD--VFYTGTADGKIVKIEGRNIHVLATIGKPPCGSREHE--HTCGRPLGIRVGPNG------TLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDE 267          
BLAST of FC921119 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 75/238 (31.51%), Postives = 114/238 (47.90%), Query Frame = 2
Query:    2 VTVFLTGGPVFLAMLVYKLDSFDPAPIPVHEFTHPPLTAALRNERM-LQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVT---------LNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNSTVLLT--DEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQ 667
            V +   GG + L +LV       P    +   + PPL +        L+ ++++    L GPE +       LIYTG  DG I ++          L   P D       + G RPLGI    +       T+ VADAY GL K++   G  T L++      G++    + +DV  DG  +YFTD+S+++  R+Y+  I E   +GR+L +D  TKE  VL+ +L FANG+ L PD+
Sbjct:   40 VILVTLGGCLILPLLVVFFLLESPIHPELLSLSEPPLMSGCYEPNFKLREAQRLFEDQLVGPESIAN--FGDLIYTGTADGKIVKIEGKSITVIARLGKPPCDGSREQEPSCG-RPLGIRVGPNG------TLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDE 268          
BLAST of FC921119 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 57/180 (31.67%), Postives = 82/180 (45.56%), Query Frame = 2
Query:  179 GPEDLLYDAHSKLIYTGC----------EDGWIKRVTLNDSPADSLVHNWINTG-----GRPLGIAFANSDPDADRITMIVADAYKGLLKIS--GNSTVLLTDEAEGQKFKLTDGVDV-ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPD 664
            GPE   +D+  K  YTG           E G++    + +S   S     I T      GRP GIAF     D     + VADA  GL  IS  G     +TD  +G+ FK  DG+DV    G++YFT  S+++   + ++ +      G+L  +DP TK   VL+  L  + G  +S D
Sbjct:   38 GPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCDGTIGTALAGRCGRPAGIAFNEKTGD-----LYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSD 212          
The following BLAST results are available for this feature:
BLAST of FC921119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
APMAP_CHICK1.303e-2233.33Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_BOVIN4.192e-2133.20Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_HUMAN7.151e-2135.06Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_RAT1.220e-2034.30Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_MOUSE4.635e-2034.78Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_DANRE2.543e-1832.16Adipocyte plasma membrane-associated protein OS=Da... [more]
APMAP_SALSA3.322e-1831.51Adipocyte plasma membrane-associated protein OS=Sa... [more]
STS1_ARATH1.223e-1231.67Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC32101D01EF RVDevelopN Citrus clementina cDNA clone C32101D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921119 ID=FC921119; Name=FC921119; organism=Citrus clementina; type=EST; length=720bp
GGTTACTGTATTTTTAACGGGTGGTCCTGTATTTTTAGCCATGTTGGTTT
ACAAACTCGATTCGTTCGACCCAGCTCCAATTCCTGTCCACGAGTTCACT
CACCCGCCATTAACGGCGGCGCTGCGCAACGAGCGCATGTTACAAGGATC
AGAGAAGGTAGGTTATGGAGTCTTGAAGGGACCGGAAGATCTTTTGTATG
ATGCTCACTCCAAACTCATTTACACCGGCTGTGAAGATGGGTGGATTAAG
CGAGTCACGCTCAACGACTCGCCGGCTGATTCACTTGTTCACAACTGGAT
TAATACTGGCGGCCGACCACTGGGAATCGCTTTTGCAAACAGCGATCCCG
ATGCCGATCGTATCACTATGATCGTTGCGGACGCTTACAAGGGGCTACTG
AAAATAAGCGGAAATTCAACAGTGTTGCTAACAGATGAGGCCGAGGGTCA
AAAATTCAAGCTGACGGATGGGGTAGATGTTGCTGATGATGGCATGATTT
ATTTTACAGATGCTTCGAATAAATACTACTTAAGGGAATACATCCTTGAT
ATTTTTGAGGGAAAGCCTAATGGCAGATTACTAAGCTTTGATCCAGTTAC
CAAGGAAACCAAAGTTCTCGTTTCTGACCTCTACTTTGCTAACGGAGTTG
TGCTTTCACCAGACCAACTCATCTCGTTTATTGTGAGACCTCATGAGAAG
GTGCAGAAATTTTACATCAA
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