FC921120

Overview
NameFC921120
Unique NameFC921120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7095 contig Ccv1_Contig7095:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921120 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.074e-42
Identity = 97/193 (50.26%), Postives = 126/193 (65.28%), Query Frame = 2
Query:  119 MGYGRLQPSSDPGGSSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLLVGLKTSAVG---PTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALT 688
            MGY RL PS   G S+  +  P  ATS P+                 A+++   V   +  G++    G   P +  KPTQAISRTCSK+LYPNLC+ +LL+FPGSLTA E +L+HISFN TLQ FS+ALY +S I+Y QM P VRSA+D CLELLDDSVDAL+R+L SV+++ G +     DV+TWLS+A+T
Sbjct:    1 MGYDRLGPS---GPSNPNQKDP--ATSLPE---LQKKTKTKLILFTLAVLVVGVVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE--SHSDVMTWLSSAMT 183          
BLAST of FC921120 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.108e-35
Identity = 86/198 (43.43%), Postives = 115/198 (58.08%), Query Frame = 2
Query:  119 MGYGRLQPSSDPGG---SSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLLVG----LKTSAVGPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASE-QDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLSAALT 688
            MGY RL PS   G    S+         +++ QP                 L I+  ++A +  G    LK +   P +  KP+QAIS+ C  T +P LCV SL++FPGSL AS  +DL+H++ NMTL HFS ALY ++ +S++ M P  RSA+D C+ELLDDSVDALSR+L SV+        K +DV TWLSAALT
Sbjct:    1 MGYERLGPSGATGSVTTSTTTAPILNQVSTSEQPENNNRRSKKKLVVSSIVLAISLILAAAIFAGVRSRLKLNQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLSFVDMPPRARSAYDSCVELLDDSVDALSRALSSVV----SSSAKPQDVTTWLSAALT 194          
The following BLAST results are available for this feature:
BLAST of FC921120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PME61_ARATH3.074e-4250.26Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME34_ARATH8.108e-3543.43Probable pectinesterase/pectinesterase inhibitor 3... [more]
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Properties
Property NameValue
Genbank descriptionC32101D02EF RVDevelopN Citrus clementina cDNA clone C32101D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921120 ID=FC921120; Name=FC921120; organism=Citrus clementina; type=EST; length=690bp
GATTTCGCACTTCCACATATAATTTGATTAATTATATTGTATGCAAACCC
TCCACATTCTCCTCGAAGACCCAGCCAAACAAAAAAGACTAACTGAGGTC
ATCGGTACTTGAAATCTGATGGGTTACGGCAGGCTCCAGCCCTCCTCCGA
CCCCGGGGGTTCTTCATTCCGCGAGGACCAACCCGGGCATGCCACGTCGG
CGCCCCAGCCTTCTTCCCGCAGCAGGAAGAAGCTCATCCTCCTCTCCGTC
CTCTCATTCGCATTAATCATCGCCTCCGCCGTCTCCGCCGTCCTCCTCGT
GGGCCTCAAGACGAGTGCCGTGGGCCCCACCATCGGCCACAAGCCCACCC
AGGCCATTTCCCGCACGTGCAGCAAGACCCTCTACCCGAACCTCTGCGTC
AGCTCGCTCCTCAACTTCCCGGGCTCGCTCACCGCCTCCGAGCAGGACCT
CGTCCACATTTCGTTCAACATGACGCTGCAGCACTTCAGCAGGGCCCTGT
ATTTCACCTCCGGTATCTCCTATCTCCAGATGGACCCGCACGTGCGCTCC
GCATTCGACGACTGCCTCGAGCTCCTGGACGACTCCGTGGACGCGCTCTC
ACGCTCCCTCGGCTCCGTGCTGCTGCTACCCGGAGGCGATATTAATAAAA
GAGAGGACGTGCTGACGTGGCTCAGCGCAGCGCTGACCAA
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