FC921128

Overview
NameFC921128
Unique NameFC921128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12772 contig Ccv1_Contig12772:318..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 6.304e-99
Identity = 179/229 (78.17%), Postives = 194/229 (84.72%), Query Frame = 1
Query:   19 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSL-PAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQ-HIRAQDIGELGTHLAD 699
            MASNTLMSCGI     PS LSS+KSKF  A+ +   A N  S+++MSADWMPG+PRP YLDGSAPGDFGFD L LGEVP NLERYKESELIHCRWAMLAVPGI+VPEALGLGNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+SKDP KFEE KVKEIKNGRLALLA VGFCVQ   ++    +  L THLAD
Sbjct:    1 MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLAD 228          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.181e-85
Identity = 152/227 (66.96%), Postives = 176/227 (77.53%), Query Frame = 1
Query:   22 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQ-HIRAQDIGELGTHLAD 699
            +S+ L SC  +    PS+L+ S     + +   A A  + +  MSA+W PG+PRP +LDGS+PGDFGFDPL L  VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA+P GQATYLG PVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQ   +     +  L THLAD
Sbjct:    3 SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLAD 227          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.298e-31
Identity = 97/282 (34.40%), Postives = 137/282 (48.58%), Query Frame = 1
Query:    7 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAV----SLPAAANATSKYAMSAD---WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------------------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQHIRAQDIGELGTHLAD 699
            S+   A++++M   +A    P       S  FTAV       AA   ++K  ++ D   W PG   P +LDGS  GD+GFDP  LG+  E L+                                           R++E ELIH RWAMLA  G L  E L    W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K  + ++ EIK+ RLA++AF+GF VQ        +    THL+D
Sbjct:    5 SAAAAAASSIMGTRVAPGIHPG------SGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 277          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.253e-30
Identity = 93/274 (33.94%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   25 SNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------------------------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQHIRAQDIGELGTHLAD 699
            S    +  I  T   S +SS+ S+F           A+ K A +       W PG   P YLDGS  GD+GFDP  LG+  E                                            L+R++E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K  + ++ EIK+ RLA++ F+GF VQ        +    THL+D
Sbjct:    5 STAAAASSIMGTRVVSDISSNSSRFTARFGF-GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSD 274          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.637e-30
Identity = 94/255 (36.86%), Postives = 123/255 (48.24%), Query Frame = 1
Query:    7 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQHIRAQDIGELGTHLAD 699
            SSP    N      I  T   S L   + +     + P A +AT+   ++AD     W PG   PP+LDGS PGDFGFDPL L   PE+L   +++EL+HCRWAML   GI +PE L     +    W    G Q  +  T        T+ ++E + I + E +R         +  DP             YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   QH +     I  L  HLAD
Sbjct:   16 SSPSSRRNG----SIVGTTKASFLGGRRLRVSKYSTTPTARSATT-VCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTA-GEQEYFTDT-------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 257          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.763e-30
Identity = 86/236 (36.44%), Postives = 121/236 (51.27%), Query Frame = 1
Query:   58 TAFPSVLSSSKSKF-----FTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQHIRAQDIGELGTHLAD 699
            T+ P  L+ S  +      FT++   A  ++    A   +W+PG   P YL GS  GD GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE       +   EW     G+  Y      + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG F+PL F+      +E K KE+ NGRLA+LAF+GF VQH          L  HL+D
Sbjct:   17 TSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPT----QEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 78/204 (38.24%), Postives = 106/204 (51.96%), Query Frame = 1
Query:  163 WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------------------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQ 645
            W PG   P +LDGS  GD GFDP  LG+  E L+                                           R++E ELIH RWAML   G +  EAL    W  A +   V G  ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K +  K+ EIK+ RLA++AF+ F +Q
Sbjct:   59 WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQ 259          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 89/241 (36.93%), Postives = 119/241 (49.38%), Query Frame = 1
Query:   70 SVLSSSKSKFFTAVSL-------PAAANATSKYAMSAD-----WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQHIRAQDIGELGTHLAD 699
            S++ ++K+ F     L       P  + + +  A++AD     W PG   P +LDGS PGDFGFDPL LG  PE+L+   ++EL+H RWAML   GI +PE L     +    W    G Q  +  T        T+ VIE + I + E +R         +  DP             YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   QH +     I  L  HLAD
Sbjct:   25 SIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTA-GEQEYFTDT-------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 257          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 84/229 (36.68%), Postives = 118/229 (51.53%), Query Frame = 1
Query:   76 LSSSKSKFFTAVSL-PAAANATSKYAMSA---DWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQHIRAQDIGELGTHLAD 699
            L  S  K    V+  P   + ++ + + A   +W+PG   P YL GS PGD GFDPL L E PENL  + ++EL++ RWAML V G+L+PE       +   +W A   G+  Y      + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG F+PL F+       E K KEI NGRLA+LAF+GF +QH          L  H++D
Sbjct:   23 LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEY------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISD 239          
BLAST of FC921128 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.613e-28
Identity = 73/180 (40.56%), Postives = 97/180 (53.89%), Query Frame = 1
Query:  184 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNWVQAQEW-----AAVPGGQATYLGTPVPWGTLPTILVIEFLSIAFVEHQR-SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQHQHIRAQDIGELGTHLAD 699
            P YL+G   GD+G+DP  LG+ PEN  +Y+  ELIH RWAML   G ++PEAL     N      W       + G    Y G  +P   L   +V E + +   E+ R +   D E K +PGG FDPLG +KDP++    KVKEIKNGRLA+ A +GF +Q        +  L  HL+D
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSD 260          
The following BLAST results are available for this feature:
BLAST of FC921128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB11_SOLLC6.304e-9978.17Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU5.181e-8566.96Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4A_ARATH3.298e-3134.40Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.253e-3033.94Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB12_SOLLC1.637e-3036.86Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH4.763e-3036.44Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4C_ARATH2.364e-2938.24Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB12_PETHY3.087e-2936.93Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA2.001e-2836.68Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB26_ARATH2.613e-2840.56Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC32101D11EF RVDevelopN Citrus clementina cDNA clone C32101D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921128 ID=FC921128; Name=FC921128; organism=Citrus clementina; type=EST; length=700bp
TCACACAGCTCTCCCAAAATGGCTTCCAACACTCTGATGAGCTGCGGCAT
CGCCACCACCGCTTTCCCTTCGGTCCTCTCATCTTCTAAATCCAAATTCT
TTACTGCAGTTTCACTTCCAGCTGCCGCCAATGCAACCTCGAAATACGCC
ATGTCTGCTGACTGGATGCCCGGCGAGCCCCGGCCGCCTTATCTTGATGG
TTCAGCCCCAGGGGACTTTGGATTTGACCCACTTCGGCTTGGCGAAGTTC
CTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGG
GCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGG
CAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCA
CATACTTAGGCACCCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTC
ATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAA
AGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCT
TCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAA
AATGGGCGTTTGGCATTGCTGGCATTTGTGGGTTTCTGCGTGCAACATCA
GCATATCCGGGCACAGGACATTGGAGAACTTGGCACTCACTTGGCTGATC
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