FC921130

Overview
NameFC921130
Unique NameFC921130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1252 contig Ccv1_Contig1252:613..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921130 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 59/186 (31.72%), Postives = 82/186 (44.09%), Query Frame = 2
Query:  155 DTSALTLFRLQTDTHGNLLSNWTGADACAAAWTGVVCSPKSQRVVSLSLPSHSLRGPIAPXXXXXXXXXXXXXXNRLNGTILP--LTNCTNLKLAYLSGNDFSAEIPHQISALNGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXXGRIPXXXXXXXXXXELNVSNNELYGRVP-EGLLKK 703
            D  AL  FR        ++  W   D     W GV C  K++RV++LSL  H LRGP+ P              N      +P  L NCT L+  YL  N  +  IP +I  L+G+  LDLS+NN+ G IP  +                 G++           + NVSNN L G++P +GLL +
Sbjct:   32 DGEALLSFRNGVLASDGVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASL-----------------GQL-------KRLTKFNVSNNFLVGKIPSDGLLAR 193          
BLAST of FC921130 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 60/183 (32.79%), Postives = 77/183 (42.08%), Query Frame = 2
Query:  155 DTSALTLFRLQTDTHGNLLSNWTGADACAAAWTGVVCSPKSQRVVSLSLPSHSLRG--PIAPXXXXXXXXXXXXXXNRLNGTI-LPLTNCTNLKLAYLSGNDFSAEIPHQISALNGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXXGRIPXXXXXXXXXXELNVSNNELYGRVPEGL 694
            +  AL  F LQ   H N L  W  +D+ A  W GV C+     + SL LP   L G  P                 NRL+G I    +N T+L+  YL  N+FS E P   + LN ++RLD+S NN  G IP  V                 G +P          + NVSNN L G +P  L
Sbjct:   28 EKQALLTF-LQQIPHENRLQ-WNESDS-ACNWVGVECNSNQSSIHSLRLPGTGLVGQIPSGSLGRLTELRVLSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNLP---SISLGLVDFNVSNNNLNGSIPSSL 204          
BLAST of FC921130 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 61/177 (34.46%), Postives = 78/177 (44.07%), Query Frame = 2
Query:  173 LFRLQTDTHGN-LLSNWTGADACAAAWTGVVCSPKSQRVVSLSLPSHSLRGPIA-PXXXXXXXXXXXXXXNRLNGTILP-LTNCTNLKLAYLSGNDFSAEIPHQISALNGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXXGRIPXXXXXXXXXXELNVSNNELYGRVPEGL 694
            L  L+   HG  LL N T   A    W GV C  +S RV +L LP   L GP+                 N LNG + P   N T L+  YL GN FS EIP  +  L  I+R++L+ NN  GRIP+ V                 G IP          + NVS+N+L G +P+ L
Sbjct:   32 LIALRDGVHGRPLLWNLT---APPCTWGGVQC--ESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIP---EIKIKLQQFNVSSNQLNGSIPDPL 200          
BLAST of FC921130 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 54/189 (28.57%), Postives = 78/189 (41.27%), Query Frame = 2
Query:  146 NPNDTSALTLFRLQTDTHGNLLSNWTGADACAAAWTGVVCSPKSQ----RVVSLSLPSHSLRGPIAP-XXXXXXXXXXXXXXNRLNGTILP-LTNCTNLKLAYLSGNDFSAEIPHQISALNGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXXGRIPXXXXXXXXXXELNVSNNELYGRVPEGL 694
            +P D SAL     +     N L +W   D CA+ WTGV+C P        V  L L + +L G +AP               N L G I P L N T+L    LSGN  +  +P ++ +L+ +L L +  N I G++P  +                 G+IP             + NN+L G +P  L
Sbjct:   29 HPTDVSALQYVHRKLKDPLNHLQDWKKTDPCASNWTGVICIPDPSDGFLHVKELRLLNMNLTGQLAPELGLLSNLTILNFMWNDLTGQIPPELGNLTHLIFLLLSGNQLTGSLPQELGSLSNLLILQIDYNEISGKLPTSLANLKKLKHFHMNNNSITGQIPPEYSTLTNVLHFLMDNNKLTGNLPPEL 217          
BLAST of FC921130 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 55/187 (29.41%), Postives = 80/187 (42.78%), Query Frame = 2
Query:  155 DTSALTLFRLQTDTHGNLLSNWTGADACAAAWTGVVCSPKSQRVVSLSLPSHSLRGPIAPXXXXXXXXXXXXXXNR-LNGTI-LPLTNCTNLKLAYLSGNDFSAEIPHQISALNGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXXGRIPXXXXXXXXXXELNVSNNELYGRVP-EGLLKKF 706
            D  AL  FR       + +  W   D     W GV C  K++RV++L+L  H + GP+ P              N  L G I   L NCT L+  +L  N F+  IP ++  L G+ +LD+S N + G IP  +                 G++             NVSNN L G++P +G+L  F
Sbjct:   33 DGEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASL-----------------GQL-------KKLSNFNVSNNFLVGQIPSDGVLSGF 195          
BLAST of FC921130 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 57/186 (30.65%), Postives = 76/186 (40.86%), Query Frame = 2
Query:  155 DTSALTLFRLQTDTHGNLLSNWTGADACAAAWTGVVCSPKSQRVVSLSLPSHSLRGPIAPXXXXXXXXXXXXXXNRLNGTI----LPLTNCTNLKLAYLSGNDFSAEIPHQISALNGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXXGRIPXXXXXXXXXXELNVSNNELYGRVPEGLLK 700
            D SAL  FR      G     W         WTGV+C     RV +L LP  +L G I P               RLNG      L L +C++L+  YL GN FS EIP  + +L+ ++RL+L++N   G I                     G +           + NVSNN L G +P+ L K
Sbjct:   34 DKSALLSFRSAV---GGRTLLWDVKQTSPCNWTGVLCD--GGRVTALRLPGETLSGHI-PEGIFGNLTQLRTLSLRLNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSGSL---LDLDLSLDQFNVSNNLLNGSIPKSLQK 210          
The following BLAST results are available for this feature:
BLAST of FC921130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FEI2_ARATH1.167e-1531.72LRR receptor-like serine/threonine-protein kinase ... [more]
Y2267_ARATH3.755e-1432.79Probable inactive receptor kinase At2g26730 OS=Ara... [more]
Y5659_ARATH2.434e-1334.46Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y5374_ARATH2.434e-1328.57Probable LRR receptor-like serine/threonine-protei... [more]
FEI1_ARATH3.179e-1329.41LRR receptor-like serine/threonine-protein kinase ... [more]
RLK90_ARATH2.976e-1130.65Probable inactive receptor kinase RLK902 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC32101E01EF RVDevelopN Citrus clementina cDNA clone C32101E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921130 ID=FC921130; Name=FC921130; organism=Citrus clementina; type=EST; length=710bp
GGGTAAATATATTTTTAAACACTTTGGCTCACTCTTCTCTTCCCGCCTAT
CCTCAAGCCTACTCGCTCCTCCAGAGTCCAGCATGAAGAAAGCTTATCTC
TTTCTTCTTTCTCTGCCTCTCTCACTTCTCTCCGTTTCTTCTTCAAACCC
GAATGACACAAGTGCCCTCACGCTTTTTCGTCTCCAGACCGACACTCACG
GCAACCTCCTCTCCAACTGGACGGGCGCCGACGCGTGCGCCGCAGCATGG
ACCGGCGTCGTTTGCTCGCCCAAAAGCCAGCGCGTGGTTTCACTCTCCCT
CCCCTCCCATTCACTACGTGGACCCATCGCCCCCCTCTCCCTCCTCGACC
AGCTCCGCTTCCTCGACCTCCACGACAACCGCTTGAACGGCACCATTTTG
CCCCTCACCAACTGCACCAACCTCAAACTCGCTTACCTCTCCGGCAACGA
CTTCTCCGCCGAAATCCCGCACCAAATATCGGCCCTCAATGGGATTCTCC
GCTTAGATTTATCGGATAACAACATCCGCGGCAGAATTCCGGAACAAGTG
ACGAACTTGACCCGGCTCTTGACTCTCCGGTTACAGAACAATGAGCTCAC
TGGTCGAATCCCCGATTTATCGTCCTCGCTTAAGGATTTAAAAGAGCTTA
ACGTGTCAAACAACGAACTCTACGGTCGCGTACCGGAAGGTTTGTTGAAA
AAATTCGGGG
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