FC921132

Overview
NameFC921132
Unique NameFC921132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921132_ssr2 microsatellite FC921132_ssr2:2..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig524 contig Ccv1_Contig524:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.267e-24
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 3
Query:   72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 332
            V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.267e-24
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 3
Query:   72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 332
            V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.267e-24
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 3
Query:   72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 332
            V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23
Identity = 55/89 (61.80%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLRTA 338
            V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL                     R  +R +  LFVRGDGVIL+SPPLRT+
Sbjct:    9 VEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97          
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPP 326
            V EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG                    +T R+    LFVRGD VIL++PP
Sbjct:    7 VAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91          
The following BLAST results are available for this feature:
BLAST of FC921132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM3_MOUSE1.267e-2463.22U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu... [more]
LSM3_HUMAN1.267e-2463.22U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
LSM3_BOVIN1.267e-2463.22U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta... [more]
LSM3_DICDI2.389e-2361.80Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
LSM3_SCHPO1.039e-1854.12Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
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Properties
Property NameValue
Genbank descriptionC32101E04EF RVDevelopN Citrus clementina cDNA clone C32101E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921132 ID=FC921132; Name=FC921132; organism=Citrus clementina; type=EST; length=595bp
GGAGAGAGAGAGAGAGAGAGAGAGCGAGGGAGAGCAACTGAGCAAGAATG
GCAAGCGAAGAAGAAAGCGCAGTGAAGGAGCCGTTGGATCTCATAAGACT
CAGCCTCGACGAGCGCATCTACGTTAAGCTCCGATCCGACCGTGAACTCC
GCGGCAAACTCCATGCATATGATCAACATTTAAACATGATTCTTGGGGAC
GTCGAAGAAGTTGTTACTACAGTGGAAATCGATGATGAAACTTATGAAGA
GATTGTTCGGACTACAAGGCGTACTGTTCCGTTTCTCTTTGTAAGAGGGG
ATGGTGTCATCCTAGTTTCTCCTCCACTGAGGACAGCTTAAATCGAAGAA
CAGGGTGCACACTCGATGAAGAAACCACCAATTTTACATTAATGCTTTTC
TTTCTGTCACTGTTTTTGCATTTCCTAGTTTAACATCTCAAACTGATTAC
ATGCTAAGTTGGCAATCATGAAATATCACATGTTGTTACGGCGGGCCTTG
AATTTGTATTAAGTTAGAATCTTGTCAATTAGAAACTTACGGATCAGCTT
TTGTTGTATGAACATAGTTTTCCTCACTTGACTGTATGTTCAATT
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