FC921132
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.267e-24 Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 3 Query: 72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 332 V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.267e-24 Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 3 Query: 72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 332 V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3) HSP 1 Score: 112.849 bits (281), Expect = 1.267e-24 Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 3 Query: 72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 332 V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23 Identity = 55/89 (61.80%), Postives = 62/89 (69.66%), Query Frame = 3 Query: 72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLRTA 338 V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL R +R + LFVRGDGVIL+SPPLRT+ Sbjct: 9 VEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97
BLAST of FC921132 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18 Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 3 Query: 72 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPP 326 V EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG +T R+ LFVRGD VIL++PP Sbjct: 7 VAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91 The following BLAST results are available for this feature:
BLAST of FC921132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921132 ID=FC921132; Name=FC921132; organism=Citrus clementina; type=EST; length=595bpback to top |