FC921160

Overview
NameFC921160
Unique NameFC921160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921160_ssr129 microsatellite FC921160_ssr129:129..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC921160_ssr2 microsatellite FC921160_ssr2:2..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8917 contig Ccv1_Contig8917:98..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921160 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.598e-62
Identity = 112/172 (65.12%), Postives = 133/172 (77.33%), Query Frame = 1
Query:  166 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSR 681
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYS+
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSK 516          
BLAST of FC921160 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 103/142 (72.54%), Postives = 120/142 (84.51%), Query Frame = 1
Query:  256 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSR 681
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYS+
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSK 513          
BLAST of FC921160 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.376e-59
Identity = 110/154 (71.43%), Postives = 125/154 (81.17%), Query Frame = 1
Query:  223 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSR 681
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYS+
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSK 518          
BLAST of FC921160 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  280 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT---GRPNVDWCE--SHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 678
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T   G   +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYS 137          
The following BLAST results are available for this feature:
BLAST of FC921160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM2_ARATH6.598e-6265.12Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH1.053e-5972.54Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH1.376e-5971.43Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
YL780_MIMIV1.219e-1534.06Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionC32101G11EF RVDevelopN Citrus clementina cDNA clone C32101G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921160 ID=FC921160; Name=FC921160; organism=Citrus clementina; type=EST; length=730bp
GAAAATAAAATAAAATGAATTTCTGATATGATATCAGTATCAGGTTACTT
GTGTATATAAATTTACATAAATAAAATACCACACACACTTTCAGCTTCTT
ACATGAATTGAAAGCTGAAAGCCACCCAACACACACACATAGATTCCAAT
CAATAGTACGAAATTCTAACAGATCCAAATTCAAATCGAAATCCGATCCA
GTCTCATCTCTCCTTTGCATTCACTCACCATTACCCAATGGGTTTCCCAG
CCAACGGCTCCGACGCCGGCTCCAAGCCGCTCAAGTTTCTCATCTACGGC
CGCACTGGCTGGATCGGGGGCTTGCTCGGCAAGCTCTGCCAAGCTCAGTC
CATTGACTTCACCTACGGCTCCGGCCGCCTCGAGAACCGCGCCTCCCTCG
AAGCCGACATCGCCGCCGTCAAGCCCACCCACGTCTTCAACGCGGCCGGG
GTGACCGGTAGGCCTAACGTCGACTGGTGCGAATCGCATAAGGTCGAGAC
CATACGGACTAATGTCGTCGGCACCCTTACGCTTGCTGACGTCTGCAGAG
ACAAAGGTTTGATTCTCATTAATTACGCCACCGGCTGCATCTTCGAGTAC
GATTCCGGTCACCCCCTCGGATCCGGCATCGGCTTCAAGGAGGAGGATAC
TCCGAATTTTGTCGGATCTTTCTACTCCAGACTAAGCCATGGTGGAGAGT
TGCTCAGAATTTTGAGATGTCTGTACTTTG
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