FC921173

Overview
NameFC921173
Unique NameFC921173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5082 contig Ccv1_Contig5082:106..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 61/175 (34.86%), Postives = 102/175 (58.29%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILN-RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            N+F ++A+  H + I +L+ K+ K ++C+G+S +SQ L A+    R   L+ +++  Y+                +Y++ F  RS+YM + D F +  ++VP A+LALLI+    H+     + W F +YLEAV++LPQL ++Q+T   E  TAHY+FALG  R L   +W+ R+
Sbjct:    2 NIFRISADMSHLLAIIILLLKIWKSRSCSGISARSQILFALVFTARYLDLFSTYISLYNTTMKITFLAATYA--TVYLMFFKFRSTYMRESDTFRVELLIVPAAILALLIN----HDFAPFELLWTFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFALGSYRALYIFNWIYRY 170          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD2_CAEEL (ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.442e-22
Identity = 59/172 (34.30%), Postives = 94/172 (54.65%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXXW-VIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            NLF   A+  H+I I VL+ K+ K ++C G+S +SQ L A+    R    F   +  +            +  +Y++    +++Y  + D+F I ++V+P  +LALLI+      I   + W F +YLEAV+++PQL ++  T   E  TAHY+FALG  RFL   +WV R+
Sbjct:    2 NLFRFTADVAHAIAIVVLLLKIWKSRSCEGISGRSQLLFALVFVTRYLDLFTNFFSFYNTAMKIFYLVASFGTVYLMWAKFKATYDRNNDSFRIEFLVIPSMILALLINHEF---IFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYILNWVYRY 170          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXX-WVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            N+F + A+  H++ I +L+ K+ K ++C G+S +SQ L A+    R    F   Y ++               +Y++    +++Y  + D F I ++V+P  +LAL+I+      +   + W F +YLEAV+++PQL ++  T   E  TAHY+FALG  RFL   +WV R+
Sbjct:    2 NIFRITADLAHAVAIVILLLKIWKSRSCEGISGRSQILFAVTFFTRYLDLFTSFYSLYNTVMKVLFLAGSIGTVYLMWVKFKATYDRNNDTFRIEFLVIPSIILALIINHEF---MFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYIFNWVYRY 170          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 57/176 (32.39%), Postives = 98/176 (55.68%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFN--LRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            N+F +A +  H   + VL+ K+   K+CAG+SLK+QEL A+    R   ++  F+  Y+               +++ +R +  +R SY +D+D F   ++V+PC +LAL+I+   +      + W F +YLEAV++LPQL ++Q T+ ++  T  Y+F LG  R     +WV R+
Sbjct:    2 NIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFVTRYLDIFTDFISLYNTTMKLVFLGSSLS--IVWYMRHHKIVRRSYDKDQDTFRHLFLVLPCLLLALVINEKFT---FKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGAYRSFYILNWVYRY 172          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD2_ENTHI (ER lumen protein retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 56/172 (32.56%), Postives = 93/172 (54.07%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXX-WVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            NLF ++A+ VH + I  L+ K++  K C G+SL+SQ L  I    R    F   Y ++             + IY+I    R++Y +  D   ++Y++VPC VLA +    T    +  I W F ++LEAV++LPQ+ ++++T  VE   + Y+F LG+ R L   +W+ R+
Sbjct:    4 NLFRISADLVHLLSIYFLLTKIISHKNCIGISLRSQILFFIVWVTRYLDIFYNFYSLYNTILKIVYLTTSAYTIYLISKRFRATYDKIHDTLNVWYLIVPCIVLAFIF---TEDYSITEICWTFSIFLEAVAILPQILLLRSTGEVENLNSQYIFCLGLYRALYIINWIYRY 172          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 57/174 (32.76%), Postives = 98/174 (56.32%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            N+F  A +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ ++V  Y+                +Y++    +++Y  + D+F I +++VPCA+L+L+I+   +   +  + W F +YLE+V++LPQL ++  T   E  T+HY+FALG  R L   +WV R+
Sbjct:    2 NIFRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLDLFTTYVSLYN--SVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLVPCALLSLVINHEFT---VMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSHYLFALGSYRALYLLNWVYRY 170          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 61/175 (34.86%), Postives = 96/175 (54.86%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+                ++MI    +++Y  + D F + ++VVP AVLA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+ R+
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNT--CMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAVLAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRY 170          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD21_XENTR (ER lumen protein retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  197 HSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            H   I +L+ K+ K ++CAG+S KSQ L AI    R   L+ +F+  Y+                I+MI    +++Y  + D F + +++VP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALG+ R L   +W+ R+
Sbjct:   12 HLSAILILLLKIWKSRSCAGISGKSQLLFAIVFTTRYLDLFTNFISLYNTSMKMVYVASSYA--TIWMIYSKFKATYDGNHDTFRVEFLIVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRALYLFNWIWRY 170          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 60/175 (34.29%), Postives = 96/175 (54.86%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+                ++MI    +++Y  + D F + ++VVP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+ R+
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNT--CMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRY 170          
BLAST of FC921173 vs. ExPASy Swiss-Prot
Match: ERD2_ARATH (ER lumen protein retaining receptor OS=Arabidopsis thaliana GN=ERD2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 2
Query:  170 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFN--LRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLRF 679
            N+F  A +  H I + +L+ K+   K+CAG+SLK+QEL A+    R   L+  +V  Y+               +++ +R +  +R SY +D D F   YVV+ C VL L+++   +   +  +FWAF +YLEAV++LPQL ++Q +  V+  T  YV  LG  R L   +W+ R+
Sbjct:    2 NIFRFAGDMSHLISVLILLLKIYATKSCAGISLKTQELYALVFLTRYLDLFTDYVSLYN--SIMKIVFIASSLAIVWCMRRHPLVRRSYDKDLDTFRHQYVVLACFVLGLILNEKFT---VQEVFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVVFLGAYRGLYIINWIYRY 172          
The following BLAST results are available for this feature:
BLAST of FC921173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERD22_CAEEL8.193e-2434.86Putative ER lumen protein retaining receptor C28H8... [more]
ERD2_CAEEL3.442e-2234.30ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_CAEBR1.308e-2131.98ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_PETHY8.478e-2132.39ER lumen protein retaining receptor OS=Petunia hyb... [more]
ERD2_ENTHI8.478e-2132.56ER lumen protein retaining receptor OS=Entamoeba h... [more]
ERD2_DROME2.467e-2032.76ER lumen protein retaining receptor OS=Drosophila ... [more]
ERD21_RAT4.208e-2034.86ER lumen protein retaining receptor 1 OS=Rattus no... [more]
ERD21_XENTR5.495e-2035.15ER lumen protein retaining receptor 1 OS=Xenopus t... [more]
ERD21_MOUSE5.495e-2034.29ER lumen protein retaining receptor 1 OS=Mus muscu... [more]
ERD2_ARATH7.177e-2034.09ER lumen protein retaining receptor OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC32102A04EF RVDevelopN Citrus clementina cDNA clone C32102A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921173 ID=FC921173; Name=FC921173; organism=Citrus clementina; type=EST; length=681bp
GAATTTCCGGTAAAATATTTTTAGACCGCTCATGAGGGCGCCGAAGAGGC
CGATCCACGCGGTTTCGACATGGGTCCGGCGACAGCCGCCGAAAGTGAAG
GCATTTTTGGCGGTGGTCTCCGGCATGGCAGCGCTGGTTTTGCTCCGATT
CATTGTACACGACCACGATAACCTCTTCGTTGCTGCCGAGGCCGTGCACT
CCATTGGAATCTCCGTGTTAATATACAAGCTCATGAAAGAGAAAACTTGT
GCTGGACTGTCACTCAAATCCCAGGAACTAACAGCTATTTTCTTAGCTGT
GAGGCTATACTGTAGTTTTGTGATGGAATATGATATACACACCCTACTGG
ATTTAGCTACTTTGGCTACGACCCTTTGGGTTATTTATATGATCCGTTTC
AATCTAAGGTCTAGTTACATGGAGGACAAGGACAACTTTGCAATATATTA
TGTGGTGGTACCCTGTGCAGTATTGGCTCTGTTAATTCATCCATCGACTT
CGCATAATATATTGAATAGGATTTTCTGGGCTTTCTGTGTTTATCTGGAA
GCTGTTTCAGTACTGCCCCAGTTGCGGGTGATGCAGAACACAAAGATTGT
TGAACCATTCACAGCCCATTATGTATTTGCGCTTGGTGTTGCGAGGTTTT
TGAGCTGTGCCCACTGGGTTCTCAGGTTCTG
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