FC921180

Overview
NameFC921180
Unique NameFC921180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_ARATH (NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2)

HSP 1 Score: 380.948 bits (977), Expect = 4.010e-105
Identity = 179/235 (76.17%), Postives = 196/235 (83.40%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDTLVTLEK 707
            RIEDK+I FYNDFNII LGLDSIEAR YIN VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+PGVTPCFECTI+LFPPQVKFPLCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEHM+WVY EA++RAELFGIPGVTYSLTQGVVK                CALETLKI S CSKTL NYLTYNG  GL+ +VT+F +D +CLVCGPG+LIELDT VTL K
Sbjct:  124 RIEDKEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLVNYLTYNGGEGLYTEVTKFERDTECLVCGPGILIELDTSVTLSK 358          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_DROME (NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.384e-57
Identity = 105/220 (47.73%), Postives = 141/220 (64.09%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHS-GKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC 659
            +I+D D SFY  F+++V GLDSI AR +IN +  S L YE D      +I PM+DGGTEGFKG+ARVI+PG T C ECT+ LFPPQV +PLCT+A TPR   HCIEY  +I+W++ +  G   D DDP+H+ W+Y  A++R+  F I GVTY L QGVVK                CALE  K+A+ C  +++NYL +N + G++    E  K ++CL C
Sbjct:  126 KIQDFDESFYQQFHLVVCGLDSIVARRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVILPGFTACIECTLDLFPPQVNYPLCTIANTPRLPEHCIEYVKIIQWEKQNPFGVPLDGDDPQHIGWIYERALERSNEFNITGVTYRLVQGVVKHIIPAVASTNAAIAAACALEVFKLATSCYDSMANYLNFNDLDGIYTYTYEAEKSENCLAC 345          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_CAEEL (NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.308e-55
Identity = 112/237 (47.26%), Postives = 139/237 (58.65%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDE--VHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVL-IELDTLVTLE 704
            RIEDK   FY  F+II+ GLDSI AR +IN + C  +    D KP E TI PM+DGGTEGFKG+ARVI P  T C +CT+ L+PPQV FPLCT+A TPR   HCIEY  ++ W E     G S D DDP H++WV   A  RAE + I GV   LT GV+K                CALE LK+A+  +K + NYL +  + G +  V   +KD +CL C  G L  E+    TLE
Sbjct:  120 RIEDKGQEFYRKFSIIICGLDSIPARRWINGMLCDLVLEMADGKPDENTIIPMIDGGTEGFKGNARVIYPKFTACIDCTLDLYPPQVNFPLCTIAHTPRLPEHCIEYIKVVVWPEEKPFEGVSLDADDPIHVEWVLERASLRAEKYNIRGVDRRLTSGVLKRIIPAVASTNAVIAASCALEALKLATNIAKPIDNYLNFTQIHGAYTSVVSMMKDDNCLTCSGGRLPFEVSPSSTLE 356          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_RAT (NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.036e-52
Identity = 103/222 (46.40%), Postives = 138/222 (62.16%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC 659
            +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++V+RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +N V GL+    E  + ++C  C
Sbjct:  147 KIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGDGVPLDGDDPEHIQWIFQKSVERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPAC 367          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_MOUSE (NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.353e-52
Identity = 102/222 (45.95%), Postives = 138/222 (62.16%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC 659
            +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++++RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +N V GL+    E  + ++C  C
Sbjct:  147 KIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGDGVPLDGDDPEHIQWIFQKSIERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPAC 367          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_PONAB (NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.309e-52
Identity = 102/222 (45.95%), Postives = 138/222 (62.16%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC 659
            +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++++RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +N V GL+    E  + ++C  C
Sbjct:  147 KIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVVAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPAC 367          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_HUMAN (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.309e-52
Identity = 102/222 (45.95%), Postives = 138/222 (62.16%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC 659
            +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++++RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +N V GL+    E  + ++C  C
Sbjct:  147 KIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPAC 367          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_DANRE (NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.954e-51
Identity = 99/222 (44.59%), Postives = 137/222 (61.71%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDE---VHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC 659
            +I+D D +FY  F+I+V GLDS+ AR ++N +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C +CT+ L+PPQ+ FP+CT+A  PR   HC+EY  ++ W +      G   D DDP+H+QWVY ++++RA  F I GVTY LTQGVVK                CA E  KIA+     L+NYL +N V GL+    E  + ++C  C
Sbjct:  146 KIQDLDETFYRQFHIVVCGLDSVIARRWMNGMLLSLLIYE-DGVLDPSSIIPLIDGGTEGFKGNARVILPGMTACIDCTLELYPPQINFPMCTIASMPRLPEHCVEYVRMLLWPKEKPFGDGVVLDGDDPKHIQWVYQKSLERAAEFNITGVTYRLTQGVVKRIIPAVASTNAVIAAACATEVFKIATSAYVPLNNYLVFNDVDGLYTYTFEAERKENCSAC 366          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_DICDI (NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.161e-50
Identity = 103/239 (43.10%), Postives = 137/239 (57.32%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDP-----DDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCGPG-VLIELDTLVTL 701
            RI+DKD  +Y  F I++ GLDSIEAR +IN +  + +          +TI P+VDGGTEGFKG ARVI+P ++ CFEC++  FPPQV + +CT+A TPR   HCI++A L    +    K FDP     D+P+HM W++  A KRAE F I GVTY LTQGV K                C  E  K  +  S  L+NY+ YNG+ G++    E+   + C VCG   V  E+D   TL
Sbjct:  127 RIQDKDEDYYRQFKIVIAGLDSIEARRWINGLLVNLVVVNDSGDIEPDTIIPLVDGGTEGFKGQARVILPKISSCFECSLDAFPPQVSYAICTIANTPRVPEHCIQWALLFGLQDATLEKPFDPKQFDNDNPDHMNWLFECAKKRAEKFNINGVTYKLTQGVAKNIIPAIASTNAIIAAACCNEVFKFCTDSSGYLNNYMMYNGLNGVYTFTFEYEIKEGCAVCGTNLVTFEIDKSNTL 365          
BLAST of FC921180 vs. ExPASy Swiss-Prot
Match: UBA3_SCHPO (NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe GN=uba3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.241e-39
Identity = 85/241 (35.27%), Postives = 126/241 (52.28%), Query Frame = 3
Query:    3 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH-------------------SGKSFDPDDPEHMQWVYSEAVKRAELFGIP--GVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCG 662
            +I+DK I FY +F +I+ GLDS+EAR +IN+   +  +  T D      + P+VDGG+EG KG ARVIIP +T C+EC++ +  P++ +P+CTLA TPR   HC+E+A+L++W  V                       +F+PD+  H+ W+   +++RA  F IP   +     QG+VK                C  E LKI +  +  L NY+ Y G  G +       K  DC VCG
Sbjct:  122 KIQDKTIEFYKEFKLIICGLDSVEARRWINSTLVAIAK--TGD------LIPLVDGGSEGLKGQARVIIPTITSCYECSLDMLTPKISYPICTLANTPRLPEHCVEWAYLLEWPRVFLNASVDSFSKQEVFEPLDGKNSNFEPDNIRHIDWLVKRSIERANKFQIPSSSINRFFVQGIVKRIIPAVASTNAIIAASCCNEALKILTESNPFLDNYMMYVGEDGAYTYTFNLEKRSDCPVCG 354          
The following BLAST results are available for this feature:
BLAST of FC921180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
UBA3_ARATH4.010e-10576.17NEDD8-activating enzyme E1 catalytic subunit OS=Ar... [more]
UBA3_DROME2.384e-5747.73NEDD8-activating enzyme E1 catalytic subunit OS=Dr... [more]
UBA3_CAEEL1.308e-5547.26NEDD8-activating enzyme E1 catalytic subunit OS=Ca... [more]
UBA3_RAT1.036e-5246.40NEDD8-activating enzyme E1 catalytic subunit OS=Ra... [more]
UBA3_MOUSE1.353e-5245.95NEDD8-activating enzyme E1 catalytic subunit OS=Mu... [more]
UBA3_PONAB2.309e-5245.95NEDD8-activating enzyme E1 catalytic subunit OS=Po... [more]
UBA3_HUMAN2.309e-5245.95NEDD8-activating enzyme E1 catalytic subunit OS=Ho... [more]
UBA3_DANRE1.954e-5144.59NEDD8-activating enzyme E1 catalytic subunit OS=Da... [more]
UBA3_DICDI2.161e-5043.10NEDD8-activating enzyme E1 catalytic subunit OS=Di... [more]
UBA3_SCHPO2.241e-3935.27NEDD8-activating enzyme E1 catalytic subunit OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionC32102B01EF RVDevelopN Citrus clementina cDNA clone C32102B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921180 ID=FC921180; Name=FC921180; organism=Citrus clementina; type=EST; length=764bp
GCCGAATTGAGGATAAAGACATTTCATTTTACAATGATTTTAATATCATT
GTCCTTGGTCTCGATTCCATCGAGGCTCGGAGTTATATAAATGCTGTAGC
ATGTAGTTTTCTTGAATATGAGACTGATGACAAGCCACGAGAAGAAACAA
TCAAACCCATGGTAGATGGGGGTACTGAAGGTTTTAAGGGTCATGCAAGG
GTTATTATACCAGGAGTCACACCGTGCTTTGAGTGTACCATCTGGCTTTT
CCCCCCTCAAGTGAAGTTTCCTTTATGCACTCTTGCGGAAACCCCTAGAA
CAGCTGCTCATTGTATTGAATATGCCCATTTAATCAAGTGGGATGAGGTG
CACAGTGGAAAGTCTTTTGATCCAGATGACCCGGAACATATGCAGTGGGT
CTATTCCGAGGCCGTCAAGAGAGCTGAGCTTTTTGGCATTCCTGGAGTTA
CATATTCTCTGACTCAGGGTGTTGTGAAAAACATCATACCAGCTATTGCT
TCCACCAATGCAATTATATCAGCAGCATGTGCTCTTGAAACATTGAAGAT
TGCATCAGGATGCAGCAAAACTCTATCAAATTATCTAACTTATAATGGTG
TTGCAGGTCTACACATAAAAGTTACTGAATTCGTGAAGGACAAGGACTGT
CTTGTATGTGGTCCAGGTGTTCTTATTGAATTGGACACTTTAGTTACTCT
AGAAAAGTCATTATCTACTTGAAGAGCATCTAGCTGCAGTAGCAAAGCAG
TGTCACATACCGAG
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