FC921182

Overview
NameFC921182
Unique NameFC921182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921182_ssr143 microsatellite FC921182_ssr143:143..154. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11715 contig Ccv1_Contig11715:319..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921182 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.143e-51
Identity = 100/153 (65.36%), Postives = 119/153 (77.78%), Query Frame = 3 
Query:  180 LACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSSSDSQNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGED 638
            LAC ATR+PD C  SLS+   VPP+P P Q+I SAI  S QNL+TA+S +K I+DSS  + NR+ AA TCLQ+L YS  R+QS   AL RGK+KDARAW SAAL YQYD WSALKYVNDT QVGETM+FLD L  +TSNALSMM+S+DNFG++
Sbjct:   47 LACNATRYPDQCVSSLSEQGRVPPDPKPIQIIHSAISFSFQNLKTAQSKIKSIVDSSVGNLNRTNAANTCLQLLTYSEHRTQSTDQALTRGKIKDARAWMSAALVYQYDSWSALKYVNDTSQVGETMSFLDGLIHVTSNALSMMVSYDNFGDN 199
[Close]
BLAST of FC921182 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.205e-46
Identity = 89/153 (58.17%), Postives = 114/153 (74.51%), Query Frame = 3 
Query:  180 LACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSQNLETAKSMVKRILDSSSDSQNRSRAATTCLQILGYSGARSQSASDALPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGED 638
            LAC ATRFPD C  SLS+   VPP+P P Q+I SAI VS +NL++ +S ++ ILDSS+ ++NR+  AT CL+IL YS  R++S   A+  G +KDARAW SAAL YQ+DCWS LK VNDTKQV +T+ F + L  LT NALSMM+SFD+FG+D
Sbjct:   95 LACNATRFPDHCVASLSKPGQVPPDPKPVQIIHSAISVSYENLKSGQSKIQSILDSSAGNRNRTNIATICLEILSYSQHRTESTDIAVTSGDIKDARAWMSAALAYQFDCWSGLKTVNDTKQVVDTITFFEGLVNLTGNALSMMLSFDSFGDD 247
The following BLAST results are available for this feature:
BLAST of FC921182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PME51_ARATH1.143e-5165.36Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME64_ARATH4.205e-4658.17Probable pectinesterase/pectinesterase inhibitor 6... [more]
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Properties
Property NameValue
Genbank descriptionC32102B03EF RVDevelopN Citrus clementina cDNA clone C32102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921182 ID=FC921182; Name=FC921182; organism=Citrus clementina; type=EST; length=657bp
ATTCACTCCTCCACAAGAAACCCACCAAGTCCAGTCTCCTCACTCTCTTC
TCAATGGCTTCCGCTCTTCTCATTTCCCTCTTATCCCTCTCCCTCTTATT
TTCTCTTTCTTCTTCAACCTCTCGTCGTCACCACACTCCCCTGCAGCAGC
AGCAACAACCGCCAGTCCCTCAAATCCAGCTCGCCTGCAAGGCCACTCGC
TTCCCCGACGTGTGCCAGCAATCCCTCTCCCAATCCCACAACGTCCCCCC
TAATCCCTCCCCCGCGCAAATGATCCAATCCGCCATCGGGGTCTCCTCCC
AAAACCTCGAGACCGCCAAATCGATGGTGAAGCGGATCCTCGACTCCTCC
TCCGACAGTCAGAACCGCTCCCGGGCCGCCACCACGTGTCTCCAGATCCT
CGGCTACTCCGGGGCGAGGTCCCAGTCGGCCTCCGACGCGCTGCCGCGTG
GGAAACTCAAGGACGCGCGCGCATGGTACAGTGCGGCCCTCACTTACCAG
TACGACTGCTGGTCGGCGCTCAAGTACGTTAACGACACCAAGCAGGTGGG
CGAAACGATGGCGTTTTTGGACTCCCTGACTGGGCTGACGAGCAATGCGC
TGAGTATGATGATGTCGTTTGATAATTTTGGCGAAGATTTTACGCGTGGC
GGGCCCC
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